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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
5677 8019010 NM_020649 CBX8 link to infopage chromobox homolog 8

Fetching correlation data, please wait...
Getting list of correlations for id 5677.
Getting list of p-values for id 5677.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.107 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8019010 7945652 NM_001012708 KRTAP5-3 link to infopage 0.785454 3.429330e-23 5.942001e-19 5.942001e-19
2 8019010 7995338 link to infopage 0.757082 9.337412e-21 1.617893e-16 8.089466e-17
3 8019010 7954434 ENST00000410223 link to infopage 0.756959 9.551027e-21 1.654906e-16 5.516355e-17
4 8019010 7985571 NR_026811 LOC80154 link to infopage 0.745388 7.568941e-20 1.311470e-15 3.278676e-16
5 8019010 7995320 link to infopage 0.740156 1.861329e-19 3.225124e-15 6.450248e-16
6 8019010 7995350 link to infopage 0.737429 2.949369e-19 5.110372e-15 8.517287e-16
7 8019010 7995342 link to infopage 0.733171 5.985484e-19 1.037105e-14 1.481578e-15
8 8019010 8157383 NM_032888 COL27A1 link to infopage 0.730728 8.929279e-19 1.547176e-14 1.933970e-15
9 8019010 7995336 link to infopage 0.729369 1.113237e-18 1.928905e-14 2.143228e-15
10 8019010 7995348 link to infopage 0.726575 1.744922e-18 3.023427e-14 3.023427e-15
11 8019010 7932862 ENST00000410143 link to infopage 0.725703 2.005473e-18 3.474883e-14 3.158985e-15
12 8019010 7995352 link to infopage 0.715114 1.041967e-17 1.805415e-13 1.504513e-14
13 8019010 8150433 NM_152568 NKX6-3 link to infopage 0.712284 1.598504e-17 2.769728e-13 2.130560e-14
14 8019010 7995330 link to infopage 0.707519 3.247397e-17 5.626765e-13 4.019118e-14
15 8019010 8064156 NM_032527 ZGPAT link to infopage 0.703266 6.042383e-17 1.046964e-12 6.979758e-14
16 8019010 8048712 BC033986 LOC440934 link to infopage 0.701367 7.944549e-17 1.376552e-12 8.603450e-14
17 8019010 8035551 BC004943 MGC10814 link to infopage 0.689167 4.384747e-16 7.597451e-12 4.469089e-13
18 8019010 8052370 ENST00000365474 link to infopage 0.688633 4.716484e-16 8.172252e-12 4.540140e-13
19 8019010 8014865 NM_006160 NEUROD2 link to infopage 0.685107 7.600559e-16 1.316949e-11 6.931310e-13
20 8019010 7982282 ENST00000410778 link to infopage 0.681286 1.265220e-15 2.192247e-11 1.096124e-12
21 8019010 7982307 ENST00000410778 link to infopage 0.681286 1.265220e-15 2.192247e-11 1.043927e-12
22 8019010 8037355 NM_182498 ZNF428 link to infopage 0.678528 1.819052e-15 3.151871e-11 1.432669e-12
23 8019010 7902036 link to infopage 0.674919 2.908297e-15 5.039206e-11 2.190959e-12
24 8019010 8052676 link to infopage 0.674914 2.910109e-15 5.042346e-11 2.100978e-12
25 8019010 8058516 link to infopage 0.673983 3.281352e-15 5.685599e-11 2.274240e-12
26 8019010 7960512 link to infopage 0.673886 3.322319e-15 5.756583e-11 2.214070e-12
27 8019010 8073623 NM_001044370 MPPED1 link to infopage 0.668934 6.241894e-15 1.081533e-10 4.005678e-12
28 8019010 7901746 link to infopage 0.664464 1.091693e-14 1.891576e-10 6.755628e-12
29 8019010 7911355 NM_177987 TUBB8 link to infopage 0.664298 1.114415e-14 1.930947e-10 6.658437e-12
30 8019010 8034744 NM_001145028 PALM3 link to infopage 0.663117 1.289525e-14 2.234359e-10 7.447865e-12
31 8019010 7939665 NM_001012334 MDK link to infopage 0.662400 1.408659e-14 2.440783e-10 7.873495e-12
32 8019010 7970565 link to infopage 0.661795 1.517470e-14 2.629320e-10 8.216627e-12
33 8019010 7931379 NM_002412 MGMT link to infopage 0.660160 1.853383e-14 3.211356e-10 9.731383e-12
34 8019010 7985431 NR_026811 LOC80154 link to infopage 0.659157 2.094045e-14 3.628353e-10 1.067163e-11
35 8019010 7990952 NR_026811 LOC80154 link to infopage 0.658298 2.324184e-14 4.027114e-10 1.150604e-11
36 8019010 7995322 link to infopage 0.654385 3.720230e-14 6.446042e-10 1.790567e-11
37 8019010 8177413 NR_001555 GOLGA2P2Y link to infopage 0.653741 4.016985e-14 6.960231e-10 1.881143e-11
38 8019010 8176910 NR_001555 GOLGA2P2Y link to infopage 0.653741 4.016985e-14 6.960231e-10 1.831640e-11
39 8019010 7991714 link to infopage 0.650642 5.797308e-14 1.004500e-9 2.575640e-11
40 8019010 8035646 NM_023002 HAPLN4 link to infopage 0.649922 6.309034e-14 1.093166e-9 2.732916e-11
41 8019010 7918869 NM_002506 NGF link to infopage 0.648812 7.185336e-14 1.245003e-9 3.036593e-11
42 8019010 8128667 link to infopage 0.644641 1.165535e-13 2.019523e-9 4.808388e-11
43 8019010 8043685 link to infopage 0.641294 1.709186e-13 2.961506e-9 6.887223e-11
44 8019010 8066590 NM_003279 TNNC2 link to infopage 0.640266 1.920663e-13 3.327933e-9 7.563484e-11
45 8019010 8031999 NM_003712 PPAP2C link to infopage 0.636801 2.836951e-13 4.915585e-9 1.092352e-10
46 8019010 7982267 ENST00000459113 link to infopage 0.636096 3.069282e-13 5.318145e-9 1.156118e-10
47 8019010 8039805 NM_003969 UBE2M link to infopage 0.634332 3.734222e-13 6.470286e-9 1.376657e-10
48 8019010 7928870 ENST00000363306 link to infopage 0.634322 3.738301e-13 6.477355e-9 1.349449e-10
49 8019010 7982228 ENST00000459172 link to infopage 0.634295 3.749634e-13 6.496991e-9 1.325917e-10
50 8019010 7982250 ENST00000459172 link to infopage 0.634295 3.749634e-13 6.496991e-9 1.299398e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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