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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 5 variables:
id Label1 AccNum GeneSym Info Gene Name
14784 8155460 NM_033655 CNTNAP3 link to infopage contactin associated protein-like 3
14789 8155540 NM_033655 CNTNAP3 link to infopage contactin associated protein-like 3
14790 8161460 NM_033655 CNTNAP3 link to infopage contactin associated protein-like 3
14903 8155359 NM_033655 CNTNAP3 link to infopage contactin associated protein-like 3
15053 8161288 NM_033655 CNTNAP3 link to infopage contactin associated protein-like 3

Fetching correlation data, please wait...
Getting list of correlations for id 14784.
Getting list of p-values for id 14784.
1 of 5 done.
Getting list of correlations for id 14789.
Getting list of p-values for id 14789.
2 of 5 done.
Getting list of correlations for id 14790.
Getting list of p-values for id 14790.
3 of 5 done.
Getting list of correlations for id 14903.
Getting list of p-values for id 14903.
4 of 5 done.
Getting list of correlations for id 15053.
Getting list of p-values for id 15053.
5 of 5 done.
Calculating corrections for multiple testing (n=86635), please wait...
Done; whole program took 0.352 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8155540 8161460 NM_033655 CNTNAP3 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
2 8161460 8155540 NM_033655 CNTNAP3 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
3 8155460 8161288 NM_033655 CNTNAP3 link to infopage 0.995544 1.872330e-107 1.622093e-102 5.406976e-103
4 8161288 8155460 NM_033655 CNTNAP3 link to infopage 0.995544 1.872330e-107 1.622093e-102 4.055232e-103
5 8155540 8155359 NM_033655 CNTNAP3 link to infopage 0.991122 4.362950e-92 3.779842e-87 7.559683e-88
6 8155359 8155540 NM_033655 CNTNAP3 link to infopage 0.991122 4.362950e-92 3.779842e-87 6.299736e-88
7 8155359 8161460 NM_033655 CNTNAP3 link to infopage 0.991122 4.362950e-92 3.779842e-87 5.399774e-88
8 8161460 8155359 NM_033655 CNTNAP3 link to infopage 0.991122 4.362950e-92 3.779842e-87 4.724802e-88
9 8155460 8155359 NM_033655 CNTNAP3 link to infopage 0.985581 2.673798e-81 2.316445e-76 2.573828e-77
10 8155359 8155460 NM_033655 CNTNAP3 link to infopage 0.985581 2.673798e-81 2.316445e-76 2.316445e-77
11 8161460 8155460 NM_033655 CNTNAP3 link to infopage 0.980813 5.818088e-75 5.040500e-70 4.582273e-71
12 8155460 8161460 NM_033655 CNTNAP3 link to infopage 0.980813 5.818088e-75 5.040500e-70 4.200417e-71
13 8155460 8155540 NM_033655 CNTNAP3 link to infopage 0.980813 5.818088e-75 5.040500e-70 3.877308e-71
14 8155540 8155460 NM_033655 CNTNAP3 link to infopage 0.980813 5.818088e-75 5.040500e-70 3.600357e-71
15 8161288 8155359 NM_033655 CNTNAP3 link to infopage 0.977075 5.073456e-71 4.395388e-66 2.930259e-67
16 8155359 8161288 NM_033655 CNTNAP3 link to infopage 0.977075 5.073456e-71 4.395388e-66 2.747118e-67
17 8161460 8161288 NM_033655 CNTNAP3 link to infopage 0.973420 9.429221e-68 8.169006e-63 4.805298e-64
18 8155540 8161288 NM_033655 CNTNAP3 link to infopage 0.973420 9.429221e-68 8.169006e-63 4.538337e-64
19 8161288 8155540 NM_033655 CNTNAP3 link to infopage 0.973420 9.429221e-68 8.169006e-63 4.299477e-64
20 8161288 8161460 NM_033655 CNTNAP3 link to infopage 0.973420 9.429221e-68 8.169006e-63 4.084503e-64
21 8161288 7918857 NM_005725 TSPAN2 link to infopage 0.649376 6.726342e-14 5.827366e-9 2.774936e-10
22 8155460 7918857 NM_005725 TSPAN2 link to infopage 0.642403 1.506359e-13 1.305034e-8 5.931973e-10
23 8161288 7986383 NM_000875 IGF1R link to infopage 0.641924 1.591073e-13 1.378426e-8 5.993155e-10
24 8155460 7986383 NM_000875 IGF1R link to infopage 0.639305 2.141259e-13 1.855080e-8 7.729499e-10
25 8161460 7918857 NM_005725 TSPAN2 link to infopage 0.636031 3.091546e-13 2.678361e-8 1.071344e-9
26 8155540 7918857 NM_005725 TSPAN2 link to infopage 0.636031 3.091546e-13 2.678361e-8 1.030139e-9
27 8155359 7918857 NM_005725 TSPAN2 link to infopage 0.633996 3.875815e-13 3.357813e-8 1.243634e-9
28 8155359 7986383 NM_000875 IGF1R link to infopage 0.632048 4.804936e-13 4.162756e-8 1.486699e-9
29 8155540 7986383 NM_000875 IGF1R link to infopage 0.628828 6.831789e-13 5.918721e-8 2.040938e-9
30 8161460 7986383 NM_000875 IGF1R link to infopage 0.628828 6.831789e-13 5.918721e-8 1.972907e-9
31 8155359 8100798 NM_014465 SULT1B1 link to infopage 0.627185 8.162627e-13 7.071692e-8 2.281191e-9
32 8161460 8100798 NM_014465 SULT1B1 link to infopage 0.626576 8.717145e-13 7.552099e-8 2.360031e-9
33 8155540 8100798 NM_014465 SULT1B1 link to infopage 0.626576 8.717145e-13 7.552099e-8 2.288515e-9
34 8161288 8100798 NM_014465 SULT1B1 link to infopage 0.625844 9.431209e-13 8.170728e-8 2.403155e-9
35 8161288 7959834 NM_144669 GLT1D1 link to infopage 0.625706 9.571768e-13 8.292501e-8 2.369286e-9
36 8155460 8100798 NM_014465 SULT1B1 link to infopage 0.625309 9.989255e-13 8.654191e-8 2.403942e-9
37 8161288 8126303 NM_018643 TREM1 link to infopage 0.625252 1.005035e-12 8.707123e-8 2.353276e-9
38 8161288 8136662 NM_004668 MGAM link to infopage 0.625139 1.017242e-12 8.812880e-8 2.319179e-9
39 8161460 8058182 NM_173822 FAM126B link to infopage 0.617659 2.244598e-12 1.944607e-7 4.986172e-9
40 8155540 8058182 NM_173822 FAM126B link to infopage 0.617659 2.244598e-12 1.944607e-7 4.861518e-9
41 8155540 8087380 NM_003363 USP4 link to infopage 0.614709 3.049422e-12 2.641867e-7 6.443578e-9
42 8161460 8087380 NM_003363 USP4 link to infopage 0.614709 3.049422e-12 2.641867e-7 6.290160e-9
43 8155359 8058182 NM_173822 FAM126B link to infopage 0.614551 3.099605e-12 2.685343e-7 6.244984e-9
44 8155460 7959834 NM_144669 GLT1D1 link to infopage 0.614499 3.116375e-12 2.699871e-7 6.136071e-9
45 8155460 8126303 NM_018643 TREM1 link to infopage 0.614343 3.166906e-12 2.743649e-7 6.096998e-9
46 8155359 8087380 NM_003363 USP4 link to infopage 0.611436 4.268195e-12 3.697751e-7 8.038589e-9
47 8155460 8136662 NM_004668 MGAM link to infopage 0.608810 5.574396e-12 4.829378e-7 1.027527e-8
48 8161288 7983910 NM_020980 AQP9 link to infopage 0.608509 5.746624e-12 4.978587e-7 1.037206e-8
49 8155540 8126303 NM_018643 TREM1 link to infopage 0.608115 5.979750e-12 5.180556e-7 1.057256e-8
50 8161460 8126303 NM_018643 TREM1 link to infopage 0.608115 5.979750e-12 5.180556e-7 1.036111e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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