[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1068	8083260	NM_001870	CPA3		carboxypeptidase A3 (mast cell)

Fetching correlation data, please wait...
Getting list of correlations for id 1068.
Getting list of p-values for id 1068.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.107 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8083260	7988672	NM_002112	HDC	0.784052	4.613321e-23	7.993501e-19	7.993501e-19
2	8083260	7906443	NM_002001	FCER1A	0.727112	1.601148e-18	2.774310e-14	1.387155e-14
3	8083260	8020684	NM_021624	HRH4	0.711132	1.899669e-17	3.291556e-13	1.097185e-13
4	8083260	8122807	NM_005100	AKAP12	0.548320	1.405718e-9	2.435687e-5	6.089217e-6
5	8083260	8174051	NM_000061	BTK	0.529357	6.404785e-9	1.109757e-4	2.219514e-5
6	8083260	8044021	NM_016232	IL1RL1	0.526117	8.222337e-9	1.424684e-4	2.374474e-5
7	8083260	8094911	NM_020453	ATP10D	0.504444	4.096575e-8	7.098136e-4	1.014019e-4
8	8083260	7911155	NM_016002	SCCPDH	0.494002	8.540748e-8	1.479855e-3	1.849819e-4
9	8083260	7978492	NM_015473	HEATR5A	0.478112	2.495114e-7	4.323283e-3	4.803648e-4
10	8083260	8100231	NM_003215	TEC	0.477374	2.619194e-7	4.538278e-3	4.538278e-4
11	8083260	7967563	NM_021009	UBC	0.454331	1.125743e-6	1.950576e-2	1.773251e-3
12	8083260	7948444	NM_001062	TCN1	0.452830	1.233390e-6	2.137094e-2	1.780912e-3
13	8083260	7953385	NM_002046	GAPDH	0.452630	1.248477e-6	2.163236e-2	1.664028e-3
14	8083260	8149707	NM_018688	BIN3	0.444310	2.054588e-6	3.559984e-2	2.542846e-3
15	8083260	7945182	NM_001642	APLP2	0.441851	2.374472e-6	4.114248e-2	2.742832e-3
16	8083260	8090469	NM_032638	GATA2	0.438650	2.861894e-6	4.958804e-2	3.099253e-3
17	8083260	8007505	NM_004941	DHX8	0.433004	3.959971e-6	6.861441e-2	4.036142e-3
18	8083260	7929511	NM_001776	ENTPD1	0.432074	4.175195e-6	7.234361e-2	4.019089e-3
19	8083260	8033332	NR_024075	EMR4P	0.431845	4.229892e-6	7.329134e-2	3.857439e-3
20	8083260	7984989	NM_017828	COMMD4	-0.428888	4.999471e-6	8.662584e-2	4.331292e-3
21	8083260	8112439	NM_176816	CCDC125	0.427496	5.405850e-6	9.366717e-2	4.460342e-3
22	8083260	7963061	NM_001008223	C1QL4	-0.427133	5.516902e-6	9.559135e-2	4.345061e-3
23	8083260	7911178	NM_004895	NLRP3	0.426763	5.632258e-6	9.759013e-2	4.243049e-3
24	8083260	8032974	NM_014649	SAFB2	0.425864	5.921802e-6	1.026071e-1	4.275294e-3
25	8083260	7980403	BC015054	VIPAR	0.425194	6.146817e-6	1.065059e-1	4.260236e-3
26	8083260	8085062	NM_000564	IL5RA	0.424279	6.467348e-6	1.120597e-1	4.309990e-3
27	8083260	8129677	NM_001143676	SGK1	0.424013	6.563326e-6	1.137227e-1	4.211954e-3
28	8083260	7966356	NM_001040107	HVCN1	0.423701	6.677748e-6	1.157053e-1	4.132333e-3
29	8083260	7926207	NM_006023	CDC123	0.421969	7.347520e-6	1.273105e-1	4.390016e-3
30	8083260	8175393	NM_004840	ARHGEF6	0.419929	8.217373e-6	1.423824e-1	4.746081e-3
31	8083260	8000409	NM_005517	HMGN2	0.418505	8.881242e-6	1.538853e-1	4.964041e-3
32	8083260	8016562	NM_001007230	SPOP	0.418006	9.125704e-6	1.581211e-1	4.941284e-3
33	8083260	8077858	NM_006395	ATG7	0.416377	9.968028e-6	1.727160e-1	5.233819e-3
34	8083260	7922773	NM_000433	NCF2	0.415961	1.019457e-5	1.766414e-1	5.195334e-3
35	8083260	8064438	NM_016143	NSFL1C	0.415505	1.044837e-5	1.810389e-1	5.172539e-3
36	8083260	8177628	NM_176816	CCDC125	0.414814	1.084468e-5	1.879058e-1	5.219605e-3
37	8083260	7982204	NM_005517	HMGN2	0.413968	1.134913e-5	1.966464e-1	5.314767e-3
38	8083260	8036755	NM_001828	CLC	0.413557	1.160177e-5	2.010238e-1	5.290101e-3
39	8083260	7940118	NR_024091	ZFP91-CNTF	0.412844	1.205293e-5	2.088412e-1	5.354902e-3
40	8083260	8119109	NM_152734	C6orf89	0.412639	1.218567e-5	2.111411e-1	5.278526e-3
41	8083260	7933509	NM_000124	ERCC6	0.412362	1.236779e-5	2.142967e-1	5.226750e-3
42	8083260	8025000	NM_001017921	VMAC	-0.410687	1.352107e-5	2.342796e-1	5.578085e-3
43	8083260	8007471	NM_031858	NBR1	0.410290	1.380868e-5	2.392630e-1	5.564257e-3
44	8083260	SNORD44			-0.409787	1.418151e-5	2.457230e-1	5.584614e-3
45	8083260	7905171	NM_004698	PRPF3	0.409668	1.427167e-5	2.472852e-1	5.495227e-3
46	8083260	8064790	NM_014737	RASSF2	0.408901	1.486145e-5	2.575044e-1	5.597922e-3
47	8083260	8136557	NM_001130966	TBXAS1	0.408429	1.523618e-5	2.639972e-1	5.616962e-3
48	8083260	8055309			-0.408377	1.527841e-5	2.647290e-1	5.515188e-3
49	8083260	8017599	NM_000442	PECAM1	0.405825	1.746783e-5	3.026651e-1	6.176839e-3
50	8083260	8165648	AK290098	C7orf11	0.404537	1.868165e-5	3.236969e-1	6.473939e-3

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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