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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
3952 8000117 NM_001888 CRYM link to infopage crystallin, mu

Fetching correlation data, please wait...
Getting list of correlations for id 3952.
Getting list of p-values for id 3952.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.134 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8000117 7927889 NM_018237 CCAR1 link to infopage -0.675453 2.714497e-15 4.703408e-11 4.703408e-11
2 8000117 7898030 NM_001099852 PRAMEF20 link to infopage 0.648396 7.542613e-14 1.306909e-9 6.534543e-10
3 8000117 8125805 NM_000841 GRM4 link to infopage 0.638244 2.413020e-13 4.181039e-9 1.393680e-9
4 8000117 7985459 ENST00000342039 link to infopage 0.627894 7.560176e-13 1.309952e-8 3.274879e-9
5 8000117 7990928 ENST00000342039 link to infopage 0.627894 7.560176e-13 1.309952e-8 2.619903e-9
6 8000117 7985418 ENST00000342039 link to infopage 0.627894 7.560176e-13 1.309952e-8 2.183253e-9
7 8000117 8031057 NM_002739 PRKCG link to infopage 0.621587 1.485254e-12 2.573500e-8 3.676428e-9
8 8000117 7933310 ENST00000319426 link to infopage 0.620373 1.688522e-12 2.925701e-8 3.657127e-9
9 8000117 8001496 NM_007006 NUDT21 link to infopage -0.619456 1.859597e-12 3.222124e-8 3.580137e-9
10 8000117 8073799 NM_013236 ATXN10 link to infopage -0.619178 1.914617e-12 3.317457e-8 3.317457e-9
11 8000117 8027728 NM_182983 HPN link to infopage 0.619113 1.927845e-12 3.340378e-8 3.036707e-9
12 8000117 7964388 NM_020142 NDUFA4L2 link to infopage 0.618296 2.100134e-12 3.638902e-8 3.032418e-9
13 8000117 8026900 NM_002248 KCNN1 link to infopage 0.617312 2.327370e-12 4.032634e-8 3.102026e-9
14 8000117 8103755 NM_012180 FBXO8 link to infopage -0.617200 2.354699e-12 4.079987e-8 2.914276e-9
15 8000117 8076792 NM_022766 CERK link to infopage -0.616993 2.406092e-12 4.169035e-8 2.779357e-9
16 8000117 7981249 NM_032233 SETD3 link to infopage -0.615587 2.784482e-12 4.824672e-8 3.015420e-9
17 8000117 8095048 NM_030917 FIP1L1 link to infopage -0.615423 2.832406e-12 4.907710e-8 2.886889e-9
18 8000117 8086057 NM_014517 UBP1 link to infopage -0.614766 3.031542e-12 5.252753e-8 2.918196e-9
19 8000117 8027279 NM_025189 ZNF430 link to infopage -0.613399 3.490245e-12 6.047547e-8 3.182919e-9
20 8000117 8049166 NM_005199 CHRNG link to infopage 0.612651 3.768967e-12 6.530490e-8 3.265245e-9
21 8000117 8093191 NM_001098424 DLG1 link to infopage -0.611800 4.112438e-12 7.125622e-8 3.393153e-9
22 8000117 8022625 NM_001007559 SS18 link to infopage -0.611171 4.385053e-12 7.597982e-8 3.453628e-9
23 8000117 7898052 NM_001099852 PRAMEF20 link to infopage 0.611166 4.387326e-12 7.601920e-8 3.305183e-9
24 8000117 7976101 NM_024824 ZC3H14 link to infopage -0.609918 4.981935e-12 8.632199e-8 3.596750e-9
25 8000117 7905559 NM_001010857 LELP1 link to infopage 0.609289 5.310398e-12 9.201326e-8 3.680531e-9
26 8000117 8041236 NM_014946 SPAST link to infopage -0.608142 5.963330e-12 1.033266e-7 3.974101e-9
27 8000117 8078569 NM_002078 GOLGA4 link to infopage -0.608105 5.985679e-12 1.037139e-7 3.841254e-9
28 8000117 8067409 NM_005560 LAMA5 link to infopage 0.606595 6.969164e-12 1.207547e-7 4.312668e-9
29 8000117 7984892 NM_021819 LMAN1L link to infopage 0.606088 7.332794e-12 1.270553e-7 4.381218e-9
30 8000117 8035639 NM_023002 HAPLN4 link to infopage 0.605776 7.565601e-12 1.310892e-7 4.369639e-9
31 8000117 8148692 AK027383 LOC100127925 link to infopage 0.604417 8.665393e-12 1.501453e-7 4.843396e-9
32 8000117 7980296 NM_006827 TMED10 link to infopage -0.604239 8.820069e-12 1.528253e-7 4.775792e-9
33 8000117 8050293 AK090853 FLJ33534 link to infopage 0.604111 8.933968e-12 1.547989e-7 4.690874e-9
34 8000117 8104998 NM_018034 WDR70 link to infopage -0.603872 9.148530e-12 1.585166e-7 4.662252e-9
35 8000117 8137596 NM_014671 UBE3C link to infopage -0.602927 1.004848e-11 1.741100e-7 4.974571e-9
36 8000117 8008409 NM_018896 CACNA1G link to infopage 0.602240 1.075579e-11 1.863656e-7 5.176823e-9
37 8000117 8043393 NM_018271 THNSL2 link to infopage 0.601653 1.139847e-11 1.975013e-7 5.337872e-9
38 8000117 8003149 NM_172347 KCNG4 link to infopage 0.601482 1.159252e-11 2.008635e-7 5.285882e-9
39 8000117 8090044 NM_001031702 SEMA5B link to infopage 0.600767 1.243929e-11 2.155356e-7 5.526553e-9
40 8000117 7911796 NR_024371 FLJ42875 link to infopage 0.600583 1.266541e-11 2.194535e-7 5.486338e-9
41 8000117 7923700 NM_006338 LRRN2 link to infopage 0.600092 1.329220e-11 2.303140e-7 5.617414e-9
42 8000117 8038670 NM_012427 KLK5 link to infopage 0.599920 1.351873e-11 2.342390e-7 5.577118e-9
43 8000117 7950374 NM_182904 P4HA3 link to infopage 0.599801 1.367754e-11 2.369908e-7 5.511413e-9
44 8000117 7944850 NM_032811 TBRG1 link to infopage -0.599647 1.388535e-11 2.405915e-7 5.467989e-9
45 8000117 8041902 NM_002158 FOXN2 link to infopage -0.599296 1.437129e-11 2.490114e-7 5.533586e-9
46 8000117 8107259 NM_138773 SLC25A46 link to infopage -0.598960 1.485129e-11 2.573283e-7 5.594093e-9
47 8000117 8139198 NM_152682 RWDD4A link to infopage -0.598925 1.490241e-11 2.582141e-7 5.493917e-9
48 8000117 8011011 NR_024058 YWHAE link to infopage -0.598856 1.500354e-11 2.599664e-7 5.415967e-9
49 8000117 8089128 NM_014820 TOMM70A link to infopage -0.598795 1.509222e-11 2.615028e-7 5.336792e-9
50 8000117 8061366 NM_001052 SSTR4 link to infopage 0.598204 1.598905e-11 2.770422e-7 5.540845e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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