[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3090	8129562	NM_001901	CTGF		connective tissue growth factor

Fetching correlation data, please wait...
Getting list of correlations for id 3090.
Getting list of p-values for id 3090.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.134 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8129562	8013112	NM_016084	RASD1	0.840393	3.700929e-29	6.412600e-25	6.412600e-25
2	8129562	8034754	NM_138352	SAMD1	0.818616	1.492303e-26	2.585714e-22	1.292857e-22
3	8129562	8153862	NM_001024678	LRRC24	0.818223	1.650796e-26	2.860333e-22	9.534445e-23
4	8129562	8009430	NR_027283	LOC440461	0.817228	2.128077e-26	3.687320e-22	9.218299e-23
5	8129562	8027222	NM_153221	CILP2	0.810445	1.155897e-25	2.002823e-21	4.005647e-22
6	8129562	8048460	NM_003936	CDK5R2	0.806302	3.143698e-25	5.447086e-21	9.078477e-22
7	8129562	7979876	ENST00000413777		0.804504	4.816415e-25	8.345403e-21	1.192200e-21
8	8129562	8032034	NM_001136263	C2CD4C	0.804245	5.120351e-25	8.872033e-21	1.109004e-21
9	8129562	8074558	NM_023004	RTN4R	0.803824	5.654186e-25	9.797008e-21	1.088556e-21
10	8129562	8165453	NM_001013653	LRRC26	0.802089	8.485914e-25	1.470354e-20	1.470354e-21
11	8129562	8014969	NM_152219	GJD3	0.800577	1.204832e-24	2.087613e-20	1.897830e-21
12	8129562	7940022	NM_178570	RTN4RL2	0.798779	1.820900e-24	3.155074e-20	2.629228e-21
13	8129562	7998015	NM_032451	SPIRE2	0.797438	2.470789e-24	4.281137e-20	3.293182e-21
14	8129562	7900001	NM_178548	TFAP2E	0.796686	2.929146e-24	5.075330e-20	3.625236e-21
15	8129562	8092836	NM_001080513	CPN2	0.796666	2.942812e-24	5.099011e-20	3.399340e-21
16	8129562	8016155	NM_006688	C1QL1	0.796274	3.214488e-24	5.569743e-20	3.481089e-21
17	8129562	7937433	NM_000797	DRD4	0.794904	4.371817e-24	7.575047e-20	4.455910e-21
18	8129562	8153876	NM_025251	ARHGAP39	0.794052	5.287772e-24	9.162123e-20	5.090068e-21
19	8129562	8064242	NR_027686	NCRNA00176	0.793792	5.602626e-24	9.707671e-20	5.109300e-21
20	8129562	8052018	NM_022055	KCNK12	0.791700	8.895066e-24	1.541248e-19	7.706240e-21
21	8129562	8137959	NM_001080495	TNRC18	0.790760	1.092911e-23	1.893687e-19	9.017557e-21
22	8129562	7991332	NM_018670	MESP1	0.789129	1.558556e-23	2.700509e-19	1.227504e-20
23	8129562	8074131	NM_001080420	SHANK3	0.788315	1.858545e-23	3.220301e-19	1.400131e-20
24	8129562	7912004	NM_207370	GPR153	0.786253	2.892515e-23	5.011860e-19	2.088275e-20
25	8129562	7997767	NM_153813	ZFPM1	0.786244	2.898009e-23	5.021380e-19	2.008552e-20
26	8129562	8174469	NM_012282	KCNE1L	0.786136	2.965473e-23	5.138276e-19	1.976260e-20
27	8129562	8131087	NM_001080461	UNCX	0.785860	3.145219e-23	5.449721e-19	2.018415e-20
28	8129562	7977432	NM_025268	TMEM121	0.785463	3.422191e-23	5.929631e-19	2.117725e-20
29	8129562	8092520	BC137178	C3orf70	0.785462	3.423122e-23	5.931244e-19	2.045257e-20
30	8129562	7997733	NM_005251	FOXC2	0.785030	3.752032e-23	6.501146e-19	2.167049e-20
31	8129562	7986248	AY358245	LOC643797	0.784139	4.529893e-23	7.848945e-19	2.531918e-20
32	8129562	8106976	NM_199243	GPR150	0.783262	5.448139e-23	9.439991e-19	2.949997e-20
33	8129562	8067585	NM_080606	BHLHE23	0.782695	6.135818e-23	1.063153e-18	3.221676e-20
34	8129562	7933075	NM_031866	FZD8	0.781836	7.341643e-23	1.272087e-18	3.741431e-20
35	8129562	7992758	NM_172229	KREMEN2	0.781256	8.283468e-23	1.435277e-18	4.100790e-20
36	8129562	8073449	NM_014460	CSDC2	0.780424	9.841993e-23	1.705322e-18	4.737006e-20
37	8129562	7930627	NM_000684	ADRB1	0.780040	1.065426e-22	1.846063e-18	4.989359e-20
38	8129562	8110382	NM_030567	PRR7	0.779614	1.163284e-22	2.015622e-18	5.304269e-20
39	8129562	8049567	NM_005855	RAMP1	0.779438	1.206300e-22	2.090157e-18	5.359376e-20
40	8129562	8023984	NM_001194	HCN2	0.778936	1.337306e-22	2.317150e-18	5.792876e-20
41	8129562	8065580	NM_080611	DUSP15	0.778785	1.379574e-22	2.390387e-18	5.830213e-20
42	8129562	8074063	NM_024866	ADM2	0.778420	1.486451e-22	2.575574e-18	6.132320e-20
43	8129562	7914232	NM_001003682	TMEM200B	0.777756	1.702614e-22	2.950120e-18	6.860743e-20
44	8129562	7947928	NM_031909	C1QTNF4	0.777613	1.753120e-22	3.037631e-18	6.903708e-20
45	8129562	7897006	NM_006983	MMP23B	0.777509	1.790501e-22	3.102401e-18	6.894225e-20
46	8129562	8162472	NM_021570	BARX1	0.777114	1.940636e-22	3.362540e-18	7.309870e-20
47	8129562	7950032	NM_002007	FGF4	0.777014	1.980180e-22	3.431058e-18	7.300124e-20
48	8129562	8061940	DQ080434	C20orf144	0.776564	2.169937e-22	3.759850e-18	7.833021e-20
49	8129562	8153342	NM_205545	LYPD2	0.774544	3.260865e-22	5.650101e-18	1.153082e-19
50	8129562	8141643	NM_001015072	UFSP1	0.773902	3.708807e-22	6.426250e-18	1.285250e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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