[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
12870	8153684	NM_012079	DGAT1		diacylglycerol O-acyltransferase 1
12871	8153939	NM_012079	DGAT1		diacylglycerol O-acyltransferase 1

Fetching correlation data, please wait...
Getting list of correlations for id 12870.
Getting list of p-values for id 12870.
1 of 2 done.
Getting list of correlations for id 12871.
Getting list of p-values for id 12871.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.134 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8153684	8153939	NM_012079	DGAT1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8153939	8153684	NM_012079	DGAT1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8153684	8134890	NM_005273	GNB2	0.724438	2.451707e-18	8.496144e-14	2.832048e-14
4	8153939	8134890	NM_005273	GNB2	0.724438	2.451707e-18	8.496144e-14	2.124036e-14
5	8153939	7937150	NM_001109	ADAM8	0.715734	9.481394e-18	3.285682e-13	6.571365e-14
6	8153684	7937150	NM_001109	ADAM8	0.715734	9.481394e-18	3.285682e-13	5.476137e-14
7	8153939	8032392	NM_199054	MKNK2	0.691963	2.986475e-16	1.034933e-11	1.478476e-12
8	8153684	8032392	NM_199054	MKNK2	0.691963	2.986475e-16	1.034933e-11	1.293666e-12
9	8153684	7945666	NM_001909	CTSD	0.687743	5.323739e-16	1.844888e-11	2.049876e-12
10	8153939	7945666	NM_001909	CTSD	0.687743	5.323739e-16	1.844888e-11	1.844888e-12
11	8153939	8159127	NM_002957	RXRA	0.683281	9.706486e-16	3.363686e-11	3.057896e-12
12	8153684	8159127	NM_002957	RXRA	0.683281	9.706486e-16	3.363686e-11	2.803071e-12
13	8153684	7994939	NM_014771	RNF40	0.682406	1.090603e-15	3.779376e-11	2.907212e-12
14	8153939	7994939	NM_014771	RNF40	0.682406	1.090603e-15	3.779376e-11	2.699554e-12
15	8153684	8082380	NM_172027	ABTB1	0.675829	2.585335e-15	8.959220e-11	5.972813e-12
16	8153939	8082380	NM_172027	ABTB1	0.675829	2.585335e-15	8.959220e-11	5.599512e-12
17	8153684	8026926	NM_015016	MAST3	0.673663	3.419077e-15	1.184847e-10	6.969689e-12
18	8153939	8026926	NM_015016	MAST3	0.673663	3.419077e-15	1.184847e-10	6.582484e-12
19	8153684	7941311	NM_153253	SIPA1	0.666238	8.755180e-15	3.034020e-10	1.596853e-11
20	8153939	7941311	NM_153253	SIPA1	0.666238	8.755180e-15	3.034020e-10	1.517010e-11
21	8153939	8110327	NM_006480	RGS14	0.661511	1.571097e-14	5.444478e-10	2.592609e-11
22	8153684	8110327	NM_006480	RGS14	0.661511	1.571097e-14	5.444478e-10	2.474763e-11
23	8153684	8003171	NM_021149	COTL1	0.659371	2.040320e-14	7.070526e-10	3.074142e-11
24	8153939	8003171	NM_021149	COTL1	0.659371	2.040320e-14	7.070526e-10	2.946052e-11
25	8153939	8172520	NM_006521	TFE3	0.657373	2.599217e-14	9.007328e-10	3.602931e-11
26	8153684	8172520	NM_006521	TFE3	0.657373	2.599217e-14	9.007328e-10	3.464357e-11
27	8153684	7973352	NM_014045	LRP10	0.651700	5.117100e-14	1.773280e-9	6.567703e-11
28	8153939	7973352	NM_014045	LRP10	0.651700	5.117100e-14	1.773280e-9	6.333142e-11
29	8153939	8029710	NM_003370	VASP	0.650983	5.569090e-14	1.929912e-9	6.654871e-11
30	8153684	8029710	NM_003370	VASP	0.650983	5.569090e-14	1.929912e-9	6.433042e-11
31	8153939	8016628	NM_032595	PPP1R9B	0.647519	8.354636e-14	2.895216e-9	9.339406e-11
32	8153684	8016628	NM_032595	PPP1R9B	0.647519	8.354636e-14	2.895216e-9	9.047549e-11
33	8153939	7941985	NM_006019	TCIRG1	0.645369	1.071784e-13	3.714159e-9	1.125503e-10
34	8153684	7941985	NM_006019	TCIRG1	0.645369	1.071784e-13	3.714159e-9	1.092400e-10
35	8153939	7949264	NM_006795	EHD1	0.644334	1.207449e-13	4.184293e-9	1.195512e-10
36	8153684	7949264	NM_006795	EHD1	0.644334	1.207449e-13	4.184293e-9	1.162304e-10
37	8153939	7981494	NM_001014432	AKT1	0.644205	1.225522e-13	4.246923e-9	1.147817e-10
38	8153684	7981494	NM_001014432	AKT1	0.644205	1.225522e-13	4.246923e-9	1.117611e-10
39	8153939	8079462	NM_015175	NBEAL2	0.641835	1.607216e-13	5.569646e-9	1.428114e-10
40	8153684	8079462	NM_015175	NBEAL2	0.641835	1.607216e-13	5.569646e-9	1.392411e-10
41	8153939	7942439	NM_032871	RELT	0.641282	1.711601e-13	5.931383e-9	1.446679e-10
42	8153684	7942439	NM_032871	RELT	0.641282	1.711601e-13	5.931383e-9	1.412234e-10
43	8153684	8064208	NM_025219	DNAJC5	0.636943	2.792247e-13	9.676254e-9	2.250292e-10
44	8153939	8064208	NM_025219	DNAJC5	0.636943	2.792247e-13	9.676254e-9	2.199149e-10
45	8153684	7950197	NM_015242	ARAP1	0.634514	3.659625e-13	1.268207e-8	2.818237e-10
46	8153939	7950197	NM_015242	ARAP1	0.634514	3.659625e-13	1.268207e-8	2.756971e-10
47	8153939	8034202	NM_004283	RAB3D	0.633156	4.253053e-13	1.473853e-8	3.135857e-10
48	8153684	8034202	NM_004283	RAB3D	0.633156	4.253053e-13	1.473853e-8	3.070527e-10
49	8153684	8180144	NM_004761	RGL2	0.628129	7.369963e-13	2.553987e-8	5.212219e-10
50	8153684	8178955	NM_004761	RGL2	0.628129	7.369963e-13	2.553987e-8	5.107974e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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