[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3276	8046373	NM_178120	DLX1		distal-less homeobox 1

Fetching correlation data, please wait...
Getting list of correlations for id 3276.
Getting list of p-values for id 3276.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.144 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8046373	8049598	NM_194312	ESPNL	0.770695	7.007108e-22	1.214122e-17	1.214122e-17
2	8046373	8010030	NM_003857	GALR2	0.762208	3.593607e-21	6.226642e-17	3.113321e-17
3	8046373	8057719	NM_014362	HIBCH	-0.761706	3.950559e-21	6.845133e-17	2.281711e-17
4	8046373	8127128	NM_033480	FBXO9	0.757969	7.928638e-21	1.373795e-16	3.434488e-17
5	8046373	8015187	NM_030967	KRTAP1-1	0.756342	1.069652e-20	1.853385e-16	3.706771e-17
6	8046373	7991893	BC016613	C16orf11	0.755542	1.238422e-20	2.145814e-16	3.576357e-17
7	8046373	7952752	NM_007037	ADAMTS8	0.755341	1.284649e-20	2.225911e-16	3.179873e-17
8	8046373	8151842	NM_015496	KIAA1429	-0.751987	2.357235e-20	4.084381e-16	5.105476e-17
9	8046373	7987325	NM_014691	AQR	-0.750797	2.916956e-20	5.054210e-16	5.615789e-17
10	8046373	7978093	NM_032452	JPH4	0.750116	3.293435e-20	5.706534e-16	5.706534e-17
11	8046373	8114861	NM_020117	LARS	-0.749348	3.774771e-20	6.540546e-16	5.945950e-17
12	8046373	7969935	NM_000123	ERCC5	-0.748890	4.093788e-20	7.093306e-16	5.911088e-17
13	8046373	8131087	NM_001080461	UNCX	0.748756	4.191950e-20	7.263392e-16	5.587225e-17
14	8046373	8005328	NM_016239	MYO15A	0.748066	4.734668e-20	8.203758e-16	5.859827e-17
15	8046373	8008201	NM_002507	NGFR	0.747743	5.011947e-20	8.684200e-16	5.789467e-17
16	8046373	7924351	NM_004446	EPRS	-0.747446	5.280793e-20	9.150031e-16	5.718769e-17
17	8046373	7990736	NM_014272	ADAMTS7	0.746280	6.478785e-20	1.122579e-15	6.603406e-17
18	8046373	8039524	NM_152600	ZNF579	0.744771	8.425416e-20	1.459872e-15	8.110399e-17
19	8046373	8159670	NM_006647	NOXA1	0.744620	8.649701e-20	1.498734e-15	7.888072e-17
20	8046373	8087951	NM_018165	PBRM1	-0.744553	8.750732e-20	1.516239e-15	7.581197e-17
21	8046373	8049799	NM_001001891	ANO7	0.744274	9.184282e-20	1.591361e-15	7.577907e-17
22	8046373	8097543	NM_014487	ZNF330	-0.743758	1.004155e-19	1.739900e-15	7.908634e-17
23	8046373	8137537	NM_001427	EN2	0.743173	1.110744e-19	1.924587e-15	8.367769e-17
24	8046373	7913571	NM_001102398	HNRNPR	-0.743006	1.143112e-19	1.980669e-15	8.252789e-17
25	8046373	7942553	NM_014752	SPCS2	-0.742911	1.162075e-19	2.013527e-15	8.054109e-17
26	8046373	8155942	NM_001013735	FOXB2	0.742745	1.195580e-19	2.071582e-15	7.967622e-17
27	8046373	8001449	NM_024336	IRX3	0.741313	1.528348e-19	2.648168e-15	9.808029e-17
28	8046373	8096556	NM_015143	METAP1	-0.740828	1.660121e-19	2.876491e-15	1.027318e-16
29	8046373	7905099	NM_007259	VPS45	-0.740624	1.718658e-19	2.977918e-15	1.026868e-16
30	8046373	7992147	NM_021098	CACNA1H	0.737446	2.941093e-19	5.096032e-15	1.698677e-16
31	8046373	7937560	NM_002457	MUC2	0.737429	2.949635e-19	5.110833e-15	1.648656e-16
32	8046373	8039605	NM_001005850	ZNF835	0.736590	3.394813e-19	5.882193e-15	1.838185e-16
33	8046373	8075126	NM_002430	MN1	0.736109	3.678725e-19	6.374127e-15	1.931553e-16
34	8046373	7938777	NM_005566	LDHA	-0.735580	4.017247e-19	6.960683e-15	2.047260e-16
35	8046373	8021312	NM_015285	WDR7	-0.735315	4.198369e-19	7.274515e-15	2.078433e-16
36	8046373	8154333	NM_015061	KDM4C	-0.735277	4.225152e-19	7.320921e-15	2.033589e-16
37	8046373	8116664	NM_003913	PRPF4B	-0.735240	4.251352e-19	7.366318e-15	1.990897e-16
38	8046373	8074131	NM_001080420	SHANK3	0.735155	4.311304e-19	7.470197e-15	1.965841e-16
39	8046373	7977216	NM_015656	KIF26A	0.735008	4.418094e-19	7.655232e-15	1.962880e-16
40	8046373	7969703	NM_002271	IPO5	-0.734746	4.614308e-19	7.995211e-15	1.998803e-16
41	8046373	8104307	AY249325	C5orf38	0.734398	4.888385e-19	8.470104e-15	2.065879e-16
42	8046373	7917156	NM_003902	FUBP1	-0.734366	4.914056e-19	8.514584e-15	2.027282e-16
43	8046373	7912004	NM_207370	GPR153	0.733846	5.355050e-19	9.278695e-15	2.157836e-16
44	8046373	7927099	NR_026827	LOC84856	0.733743	5.447461e-19	9.438815e-15	2.145185e-16
45	8046373	7932000	NM_012311	KIN	-0.733315	5.844927e-19	1.012750e-14	2.250557e-16
46	8046373	7958130	NM_003299	HSP90B1	-0.733214	5.943002e-19	1.029744e-14	2.238574e-16
47	8046373	7899774	NM_004964	HDAC1	-0.733091	6.065213e-19	1.050919e-14	2.235999e-16
48	8046373	8039947	NM_006625	SRSF10	-0.732320	6.883742e-19	1.192746e-14	2.484888e-16
49	8046373	8048460	NM_003936	CDK5R2	0.731575	7.777223e-19	1.347559e-14	2.750121e-16
50	8046373	7977674	NM_007192	SUPT16H	-0.731362	8.051629e-19	1.395106e-14	2.790212e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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