[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1597	8066074	NM_001145316	DSN1		DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)

Fetching correlation data, please wait...
Getting list of correlations for id 1597.
Getting list of p-values for id 1597.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.131 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8066074	7999916	NM_001002911	GPR139	-0.681400	1.246259e-15	2.159393e-11	2.159393e-11
2	8066074	8084634	NM_016306	DNAJB11	0.679047	1.699585e-15	2.944871e-11	1.472436e-11
3	8066074	8123802	NM_201280	MUTED	0.660892	1.695005e-14	2.936936e-10	9.789785e-11
4	8066074	8056766	NM_003705	SLC25A12	0.657733	2.488487e-14	4.311801e-10	1.077950e-10
5	8066074	8000772	NM_031478	FAM57B	-0.654889	3.502879e-14	6.069439e-10	1.213888e-10
6	8066074	7996022	NM_002990	CCL22	-0.652402	4.709747e-14	8.160579e-10	1.360097e-10
7	8066074	7963174	NM_147190	LASS5	0.643291	1.360913e-13	2.358054e-9	3.368649e-10
8	8066074	8059739	NM_024409	NPPC	-0.642860	1.429827e-13	2.477460e-9	3.096826e-10
9	8066074	8089954	NM_001023570	IQCB1	0.640716	1.825219e-13	3.162557e-9	3.513952e-10
10	8066074	7956007	NM_206899	OR10P1	-0.634019	3.866198e-13	6.698961e-9	6.698961e-10
11	8066074	8119408	NM_002505	NFYA	0.632944	4.353496e-13	7.543303e-9	6.857548e-10
12	8066074	8013533	ENST00000302153		-0.630406	5.752618e-13	9.967561e-9	8.306301e-10
13	8066074	8148703	NM_198572	SPATC1	-0.629353	6.452617e-13	1.118045e-8	8.600345e-10
14	8066074	8121886	NM_138571	HINT3	0.629125	6.614591e-13	1.146110e-8	8.186501e-10
15	8066074	7995193	NM_024742	ARMC5	-0.627840	7.603866e-13	1.317522e-8	8.783479e-10
16	8066074	8041888	NM_000179	MSH6	0.627031	8.299384e-13	1.438034e-8	8.987714e-10
17	8066074	7962869	NM_004818	DDX23	0.626304	8.975838e-13	1.555243e-8	9.148491e-10
18	8066074	8015187	NM_030967	KRTAP1-1	-0.625793	9.482661e-13	1.643061e-8	9.128115e-10
19	8066074	7947040	NM_194285	SPTY2D1	0.624706	1.065536e-12	1.846255e-8	9.717132e-10
20	8066074	8007100	NM_001552	IGFBP4	-0.624090	1.138128e-12	1.972034e-8	9.860171e-10
21	8066074	8020058	NM_021074	NDUFV2	0.622725	1.316343e-12	2.280827e-8	1.086108e-9
22	8066074	8039068	NM_021074	NDUFV2	0.622448	1.355623e-12	2.348888e-8	1.067676e-9
23	8066074	8133145	NM_014478	CRCP	0.622007	1.420648e-12	2.461556e-8	1.070242e-9
24	8066074	7916493	NM_003713	PPAP2B	-0.621507	1.497918e-12	2.595442e-8	1.081434e-9
25	8066074	7971820	NM_016075	VPS36	0.620858	1.604288e-12	2.779750e-8	1.111900e-9
26	8066074	8116534	NM_032765	TRIM52	0.620501	1.665928e-12	2.886554e-8	1.110213e-9
27	8066074	7988245	NM_005926	MFAP1	0.619286	1.893081e-12	3.280141e-8	1.214867e-9
28	8066074	7968898	BC039586	KIAA1704	0.619122	1.925875e-12	3.336964e-8	1.191773e-9
29	8066074	7975645	NM_021188	ZNF410	0.618805	1.990948e-12	3.449715e-8	1.189557e-9
30	8066074	7969093	NM_001507	MLNR	-0.618742	2.004148e-12	3.472588e-8	1.157529e-9
31	8066074	7935647	NM_078470	COX15	0.618668	2.019783e-12	3.499678e-8	1.128928e-9
32	8066074	7943098	NM_005959	MTNR1B	-0.617878	2.193968e-12	3.801489e-8	1.187965e-9
33	8066074	7994237	NM_016309	LCMT1	0.617763	2.220472e-12	3.847413e-8	1.165883e-9
34	8066074	8078435	NM_001039111	TRIM71	-0.617582	2.262880e-12	3.920893e-8	1.153204e-9
35	8066074	7935730	NM_018294	CWF19L1	0.614703	3.051135e-12	5.286702e-8	1.510486e-9
36	8066074	8018600	NM_014230	SRP68	0.614157	3.228340e-12	5.593745e-8	1.553818e-9
37	8066074	7900001	NM_178548	TFAP2E	-0.613485	3.459376e-12	5.994061e-8	1.620016e-9
38	8066074	8023165	NM_032124	HDHD2	0.613108	3.596320e-12	6.231343e-8	1.639827e-9
39	8066074	7991927	NM_053284	WFIKKN1	-0.612051	4.007957e-12	6.944587e-8	1.780663e-9
40	8066074	7974473	NM_017943	FBXO34	0.611504	4.238477e-12	7.344009e-8	1.836002e-9
41	8066074	7973414	NM_015514	NGDN	0.611286	4.333878e-12	7.509311e-8	1.831539e-9
42	8066074	8050497	NM_145260	OSR1	-0.610567	4.663729e-12	8.080842e-8	1.924010e-9
43	8066074	8052250	NM_001005369	MTIF2	0.609215	5.350349e-12	9.270549e-8	2.155942e-9
44	8066074	7905020	NM_000798	DRD5	-0.608701	5.636180e-12	9.765810e-8	2.219502e-9
45	8066074	7899737	NM_003757	EIF3I	0.608645	5.668284e-12	9.821435e-8	2.182541e-9
46	8066074	8060063	NM_004544	NDUFA10	0.607860	6.135954e-12	1.063177e-7	2.311254e-9
47	8066074	8005601			-0.607431	6.407038e-12	1.110147e-7	2.362016e-9
48	8066074	8104350	NM_015325	KIAA0947	0.606802	6.825592e-12	1.182670e-7	2.463896e-9
49	8066074	8111129	NM_033414	ZNF622	0.605783	7.560220e-12	1.309959e-7	2.673386e-9
50	8066074	7964413	NM_014925	R3HDM2	0.605759	7.577967e-12	1.313034e-7	2.626069e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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