[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
5708	8142540	NM_014888	FAM3C		family with sequence similarity 3, member C
5948	8166442	NM_014888	FAM3C		family with sequence similarity 3, member C

Fetching correlation data, please wait...
Getting list of correlations for id 5708.
Getting list of p-values for id 5708.
1 of 2 done.
Getting list of correlations for id 5948.
Getting list of p-values for id 5948.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.229 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8166442	8142540	NM_014888	FAM3C	0.992593	4.022622e-96	1.393999e-91	1.393999e-91
2	8142540	8166442	NM_014888	FAM3C	0.992593	4.022622e-96	1.393999e-91	6.969997e-92
3	8166442	7938448	NM_017944	USP47	0.849060	2.632272e-30	9.121875e-26	3.040625e-26
4	8142540	7938448	NM_017944	USP47	0.847456	4.347054e-30	1.506428e-25	3.766070e-26
5	8166442	8092564	NM_004593	TRA2B	0.841630	2.562560e-29	8.880295e-25	1.776059e-25
6	8166442	8047097	NM_014905	GLS	0.834448	2.074831e-28	7.190119e-24	1.198353e-24
7	8166442	8132943	NM_001762	CCT6A	0.833542	2.681784e-28	9.293453e-24	1.327636e-24
8	8142540	8092564	NM_004593	TRA2B	0.832888	3.224975e-28	1.117583e-23	1.396978e-24
9	8166442	8028186	NM_007145	ZNF146	0.832063	4.063919e-28	1.408311e-23	1.564789e-24
10	8142540	8047097	NM_014905	GLS	0.831658	4.551368e-28	1.577231e-23	1.577231e-24
11	8166442	8101340	NR_003249	HNRPDL	0.830989	5.481955e-28	1.899717e-23	1.727015e-24
12	8166442	8044745	NM_006773	DDX18	0.827302	1.507990e-27	5.225788e-23	4.354823e-24
13	8166442	8136631	NM_003143	SSBP1	0.826477	1.885227e-27	6.533067e-23	5.025436e-24
14	8142540	8028186	NM_007145	ZNF146	0.825679	2.336966e-27	8.098523e-23	5.784659e-24
15	8142540	7924351	NM_004446	EPRS	0.825415	2.508293e-27	8.692239e-23	5.794826e-24
16	8142540	8044745	NM_006773	DDX18	0.825373	2.536635e-27	8.790455e-23	5.494035e-24
17	8166442	7957633	NM_006838	METAP2	0.825073	2.748957e-27	9.526236e-23	5.603668e-24
18	8142540	8101340	NR_003249	HNRPDL	0.823580	4.089607e-27	1.417212e-22	7.873402e-24
19	8142540	8132943	NM_001762	CCT6A	0.823523	4.151290e-27	1.438588e-22	7.571517e-24
20	8166442	7924351	NM_004446	EPRS	0.823444	4.239214e-27	1.469057e-22	7.345286e-24
21	8166442	8039947	NM_006625	SRSF10	0.821404	7.248125e-27	2.511765e-22	1.196079e-23
22	8166442	8040386	NM_004939	DDX1	0.820418	9.371794e-27	3.247702e-22	1.476228e-23
23	8142540	8136631	NM_003143	SSBP1	0.819369	1.229534e-26	4.260827e-22	1.852533e-23
24	8142540	7912852	NM_001412	EIF1AX	0.819264	1.263197e-26	4.377484e-22	1.823952e-23
25	8142540	7957633	NM_006838	METAP2	0.818599	1.499100e-26	5.194982e-22	2.077993e-23
26	8166442	8084694	NM_001967	EIF4A2	0.818557	1.515168e-26	5.250665e-22	2.019486e-23
27	8166442	7953878	NM_001004419	CLEC2D	0.817561	1.955293e-26	6.775872e-22	2.509582e-23
28	8166442	7912852	NM_001412	EIF1AX	0.817491	1.990434e-26	6.897650e-22	2.463446e-23
29	8166442	8052562	NM_006430	CCT4	0.817436	2.018435e-26	6.994686e-22	2.411961e-23
30	8142540	8040386	NM_004939	DDX1	0.816559	2.522703e-26	8.742176e-22	2.914059e-23
31	8166442	7913712	NM_006625	SRSF10	0.815746	3.098718e-26	1.073830e-21	3.463967e-23
32	8142540	8084694	NM_001967	EIF4A2	0.814306	4.448991e-26	1.541753e-21	4.817979e-23
33	8166442	8046759	NM_018981	DNAJC10	0.814191	4.578730e-26	1.586713e-21	4.808221e-23
34	8142540	7958379	NM_007062	PWP1	0.813572	5.343509e-26	1.851739e-21	5.446293e-23
35	8166442	7947434	NM_033406	FBXO3	0.813259	5.776784e-26	2.001887e-21	5.719676e-23
36	8142540	8046759	NM_018981	DNAJC10	0.812993	6.171153e-26	2.138551e-21	5.940420e-23
37	8166442	8088219	NM_001112736	C3orf63	0.812436	7.084328e-26	2.455003e-21	6.635143e-23
38	8166442	7925184	NM_015014	RBM34	0.811967	7.953677e-26	2.756267e-21	7.253335e-23
39	8166442	7961654	NM_002907	RECQL	0.811960	7.968885e-26	2.761537e-21	7.080865e-23
40	8142540	8039947	NM_006625	SRSF10	0.811940	8.007219e-26	2.774822e-21	6.937054e-23
41	8166442	8067295	NM_016045	SLMO2	0.811333	9.297429e-26	3.221931e-21	7.858368e-23
42	8166442	7903188	NM_021190	PTBP2	0.811211	9.580300e-26	3.319957e-21	7.904660e-23
43	8142540	7902382	NM_004582	RABGGTB	0.811030	1.001536e-25	3.470722e-21	8.071446e-23
44	8142540	7953878	NM_001004419	CLEC2D	0.810848	1.047237e-25	3.629096e-21	8.247946e-23
45	8142540	7947434	NM_033406	FBXO3	0.810646	1.100380e-25	3.813258e-21	8.473907e-23
46	8166442	8084986	NM_032288	FYTTD1	0.810601	1.112603e-25	3.855616e-21	8.381773e-23
47	8142540	7903188	NM_021190	PTBP2	0.810382	1.173788e-25	4.067644e-21	8.654562e-23
48	8166442	8128472	NM_006828	ASCC3	0.809698	1.386854e-25	4.806005e-21	1.001251e-22
49	8166442	8057719	NM_014362	HIBCH	0.809663	1.398889e-25	4.847710e-21	9.893287e-23
50	8166442	8020323	NM_003799	RNMT	0.809260	1.542748e-25	5.346239e-21	1.069248e-22

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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