[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5908	8019392	NM_004104	FASN		fatty acid synthase

Fetching correlation data, please wait...
Getting list of correlations for id 5908.
Getting list of p-values for id 5908.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.146 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8019392	8162086	NM_015239	AGTPBP1	-0.749550	3.642206e-20	6.310850e-16	6.310850e-16
2	8019392	8097116	ENST00000364316		-0.746925	5.786698e-20	1.002661e-15	5.013306e-16
3	8019392	8167006	NM_006915	RP2	-0.746766	5.950691e-20	1.031076e-15	3.436921e-16
4	8019392	8121489	NM_001634	AMD1	-0.746202	6.566852e-20	1.137838e-15	2.844596e-16
5	8019392	8129590	NM_003569	STX7	-0.745190	7.834652e-20	1.357510e-15	2.715020e-16
6	8019392	7932616	NM_005470	ABI1	-0.743639	1.024991e-19	1.776002e-15	2.960003e-16
7	8019392	7966135	NM_014325	CORO1C	-0.742339	1.282053e-19	2.221413e-15	3.173447e-16
8	8019392	7983111	NM_003825	SNAP23	-0.741308	1.529646e-19	2.650418e-15	3.313022e-16
9	8019392	7903703	NM_006496	GNAI3	-0.740691	1.699221e-19	2.944241e-15	3.271379e-16
10	8019392	8078214	NM_004162	RAB5A	-0.735775	3.889075e-19	6.738601e-15	6.738601e-16
11	8019392	8059596	NM_004238	TRIP12	-0.735384	4.150643e-19	7.191820e-15	6.538018e-16
12	8019392	8133788	NM_002835	PTPN12	-0.735250	4.244181e-19	7.353893e-15	6.128244e-16
13	8019392	8166632	NM_001128127	GK	-0.733754	5.437386e-19	9.421360e-15	7.247200e-16
14	8019392	8045919	NM_022826	MARCH7	-0.732493	6.691335e-19	1.159408e-14	8.281483e-16
15	8019392	8096669	NM_017628	TET2	-0.732486	6.698874e-19	1.160714e-14	7.738093e-16
16	8019392	8047839	NM_004379	CREB1	-0.732270	6.940668e-19	1.202609e-14	7.516309e-16
17	8019392	8055702	NM_004688	NMI	-0.732195	7.026251e-19	1.217438e-14	7.161403e-16
18	8019392	7950838	NM_007166	PICALM	-0.730891	8.695188e-19	1.506615e-14	8.370084e-16
19	8019392	8166876	NM_001356	DDX3X	-0.728914	1.198190e-18	2.076103e-14	1.092686e-15
20	8019392	7939197	NM_005734	HIPK3	-0.728739	1.232710e-18	2.135916e-14	1.067958e-15
21	8019392	8016562	NM_001007230	SPOP	-0.728618	1.256845e-18	2.177736e-14	1.037017e-15
22	8019392	7919800	NM_004079	CTSS	-0.728345	1.313426e-18	2.275773e-14	1.034442e-15
23	8019392	8059393	NM_003590	CUL3	-0.727716	1.453401e-18	2.518307e-14	1.094916e-15
24	8019392	8022767	NM_014939	KIAA1012	-0.727028	1.622946e-18	2.812079e-14	1.171699e-15
25	8019392	8084541	NM_001009921	VPS8	-0.725990	1.915870e-18	3.319629e-14	1.327851e-15
26	8019392	7917240	NM_004388	CTBS	-0.725126	2.198205e-18	3.808830e-14	1.464934e-15
27	8019392	8146637	NM_152758	YTHDF3	-0.724709	2.348509e-18	4.069261e-14	1.507134e-15
28	8019392	8042291	NM_203437	AFTPH	-0.724576	2.398392e-18	4.155694e-14	1.484176e-15
29	8019392	8006123	NM_001304	CPD	-0.724403	2.465243e-18	4.271526e-14	1.472940e-15
30	8019392	8152865	AB062477		-0.724327	2.495132e-18	4.323315e-14	1.441105e-15
31	8019392	8033598	NM_032370	ZNF414	0.724221	2.537323e-18	4.396419e-14	1.418200e-15
32	8019392	8113358	NM_005668	ST8SIA4	-0.723971	2.639549e-18	4.573547e-14	1.429233e-15
33	8019392	8094460	NM_005349	RBPJ	-0.723817	2.704478e-18	4.686049e-14	1.420015e-15
34	8019392	7909931	NM_144695	C1orf58	-0.723593	2.802075e-18	4.855155e-14	1.427987e-15
35	8019392	8083569	NM_015508	TIPARP	-0.723387	2.894443e-18	5.015202e-14	1.432915e-15
36	8019392	8147469	NM_016134	PGCP	-0.723243	2.960688e-18	5.129984e-14	1.424996e-15
37	8019392	7902822	NM_006256	PKN2	-0.723148	3.005324e-18	5.207324e-14	1.407385e-15
38	8019392	7908437	NM_024529	CDC73	-0.722315	3.425885e-18	5.936030e-14	1.562113e-15
39	8019392	7908553	NM_002838	PTPRC	-0.721192	4.084326e-18	7.076911e-14	1.814593e-15
40	8019392	7956670	NM_006313	USP15	-0.720564	4.504251e-18	7.804515e-14	1.951129e-15
41	8019392	7933877	NM_004241	JMJD1C	-0.720034	4.891411e-18	8.475347e-14	2.067158e-15
42	8019392	8092933	NM_012287	ACAP2	-0.719914	4.983735e-18	8.635317e-14	2.056028e-15
43	8019392	8017212	NM_032582	USP32	-0.719552	5.271267e-18	9.133524e-14	2.124075e-15
44	8019392	8173766	NM_153252	BRWD3	-0.719295	5.485160e-18	9.504136e-14	2.160031e-15
45	8019392	8168472	NM_000052	ATP7A	-0.719028	5.717205e-18	9.906202e-14	2.201378e-15
46	8019392	8018439	NM_005324	H3F3B	-0.717796	6.913386e-18	1.197882e-13	2.604092e-15
47	8019392	8111698	NM_152756	RICTOR	-0.717728	6.985736e-18	1.210419e-13	2.575359e-15
48	8019392	8068266	NM_000629	IFNAR1	-0.716838	8.008766e-18	1.387679e-13	2.890998e-15
49	8019392	7930470	NM_007373	SHOC2	-0.716532	8.393397e-18	1.454324e-13	2.968008e-15
50	8019392	8089527	NM_022488	ATG3	-0.716433	8.521012e-18	1.476436e-13	2.952871e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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