[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2132	7998103	NM_001481	GAS8		growth arrest-specific 8

Fetching correlation data, please wait...
Getting list of correlations for id 2132.
Getting list of p-values for id 2132.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.141 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7998103	7984961	NM_018652	GOLGA6B	0.644366	1.203052e-13	2.084528e-9	2.084528e-9
2	7998103	8099926	NM_001100399	PDS5A	-0.641841	1.606204e-13	2.783069e-9	1.391534e-9
3	7998103	7951497	NM_002519	NPAT	-0.641235	1.720695e-13	2.981448e-9	9.938162e-10
4	7998103	8078360	NM_178862	STT3B	-0.640834	1.801067e-13	3.120708e-9	7.801770e-10
5	7998103	8090893	NM_018133	MSL2	-0.635393	3.319192e-13	5.751164e-9	1.150233e-9
6	7998103	7984662	NM_018652	GOLGA6B	0.635174	3.401283e-13	5.893403e-9	9.822338e-10
7	7998103	8075921	NM_052906	ELFN2	0.634459	3.682143e-13	6.380049e-9	9.114355e-10
8	7998103	8055445	NM_001349	DARS	-0.632563	4.540289e-13	7.866958e-9	9.833698e-10
9	7998103	8079021	NM_001904	CTNNB1	-0.631425	5.145437e-13	8.915499e-9	9.906110e-10
10	7998103	8001496	NM_007006	NUDT21	-0.625984	9.290530e-13	1.609770e-8	1.609770e-9
11	7998103	8107066	NM_005575	LNPEP	-0.625611	9.670027e-13	1.675526e-8	1.523205e-9
12	7998103	7989347	NM_024611	NARG2	-0.624528	1.086111e-12	1.881905e-8	1.568254e-9
13	7998103	8067011	NM_015339	ADNP	-0.624463	1.093609e-12	1.894896e-8	1.457612e-9
14	7998103	8022952	NM_020180	CELF4	0.623113	1.263071e-12	2.188524e-8	1.563231e-9
15	7998103	8086810	NM_003074	SMARCC1	-0.623090	1.266247e-12	2.194026e-8	1.462684e-9
16	7998103	7965359	NM_001001323	ATP2B1	-0.621851	1.444235e-12	2.502425e-8	1.564016e-9
17	7998103	7990283	NM_001038640	GOLGA6A	0.620804	1.613423e-12	2.795578e-8	1.644458e-9
18	7998103	8133459	NM_003388	CLIP2	0.620229	1.714268e-12	2.970312e-8	1.650173e-9
19	7998103	8084219	NM_017644	KLHL24	-0.619824	1.788910e-12	3.099644e-8	1.631391e-9
20	7998103	7970111	NM_003899	ARHGEF7	-0.618026	2.160106e-12	3.742816e-8	1.871408e-9
21	7998103	8090772	NM_007027	TOPBP1	-0.617334	2.322106e-12	4.023512e-8	1.915958e-9
22	7998103	8071676	NM_004914	RAB36	0.615505	2.808311e-12	4.865960e-8	2.211800e-9
23	7998103	8042119	NM_022894	PAPOLG	-0.615474	2.817238e-12	4.881428e-8	2.122360e-9
24	7998103	8082788	NM_001134422	CDV3	-0.611667	4.168374e-12	7.222541e-8	3.009392e-9
25	7998103	8093191	NM_001098424	DLG1	-0.610995	4.464595e-12	7.735804e-8	3.094322e-9
26	7998103	7897154	NM_014448	ARHGEF16	0.608777	5.593076e-12	9.691123e-8	3.727355e-9
27	7998103	8085815	NM_001068	TOP2B	-0.607112	6.615725e-12	1.146307e-7	4.245580e-9
28	7998103	7918457	NM_002232	KCNA3	-0.606713	6.886598e-12	1.193241e-7	4.261574e-9
29	7998103	8156295	NM_024077	SECISBP2	-0.606579	6.980354e-12	1.209486e-7	4.170641e-9
30	7998103	8051464	NM_019024	HEATR5B	-0.606270	7.199639e-12	1.247482e-7	4.158272e-9
31	7998103	8170716	NM_005393	PLXNB3	0.606214	7.240690e-12	1.254594e-7	4.047079e-9
32	7998103	8090639	NM_014602	PIK3R4	-0.606138	7.296233e-12	1.264218e-7	3.950682e-9
33	7998103	7947540	NM_145803	TRAF6	-0.604874	8.279560e-12	1.434599e-7	4.347271e-9
34	7998103	8128356	NM_012160	FBXL4	-0.603336	9.649036e-12	1.671888e-7	4.917319e-9
35	7998103	8045030	NM_001080527	MYO7B	0.602350	1.064035e-11	1.843653e-7	5.267580e-9
36	7998103	8021496	NM_020854	KIAA1468	-0.602237	1.075936e-11	1.864275e-7	5.178542e-9
37	7998103	8096538	NM_001100426	RAP1GDS1	-0.601479	1.159621e-11	2.009275e-7	5.430473e-9
38	7998103	8106534	NM_001114394	PAPD4	-0.599149	1.457987e-11	2.526254e-7	6.648036e-9
39	7998103	8097867	NM_015196	KIAA0922	-0.599027	1.475496e-11	2.556592e-7	6.555365e-9
40	7998103	7928126	NM_014431	KIAA1274	0.598612	1.536487e-11	2.662271e-7	6.655677e-9
41	7998103	7966517	NM_001109662	C12orf51	-0.598549	1.546067e-11	2.678870e-7	6.533830e-9
42	7998103	8062695	NM_006275	SRSF6	-0.598385	1.570985e-11	2.722046e-7	6.481061e-9
43	7998103	8032224	NM_152482	C19orf25	0.598210	1.598004e-11	2.768862e-7	6.439213e-9
44	7998103	8086706	NM_014159	SETD2	-0.597919	1.644062e-11	2.848665e-7	6.474240e-9
45	7998103	8160011	NM_001017969	KIAA2026	-0.597898	1.647412e-11	2.854471e-7	6.343269e-9
46	7998103	8095269	NM_000938	POLR2B	-0.597654	1.687010e-11	2.923082e-7	6.354526e-9
47	7998103	8148658	NM_014789	ZNF623	-0.597074	1.784875e-11	3.092652e-7	6.580111e-9
48	7998103	7961767	AK295862	KIAA0528	-0.596799	1.833239e-11	3.176453e-7	6.617611e-9
49	7998103	8092201	NM_024665	TBL1XR1	-0.595897	2.000713e-11	3.466635e-7	7.074766e-9
50	7998103	7931439	NM_006426	DPYSL4	0.595324	2.114645e-11	3.664045e-7	7.328091e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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