[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3466	8092845	NM_004488	GP5		glycoprotein V (platelet)

Fetching correlation data, please wait...
Getting list of correlations for id 3466.
Getting list of p-values for id 3466.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.147 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8092845	7937433	NM_000797	DRD4	0.735918	3.797529e-19	6.579978e-15	6.579978e-15
2	8092845	8067652	NM_001958	EEF1A2	0.735238	4.252527e-19	7.368353e-15	3.684177e-15
3	8092845	8016155	NM_006688	C1QL1	0.729225	1.139449e-18	1.974323e-14	6.581076e-15
4	8092845	8016168	NM_133373	PLCD3	0.727961	1.397146e-18	2.420835e-14	6.052088e-15
5	8092845	7898431	NM_016233	PADI3	0.727526	1.498335e-18	2.596164e-14	5.192328e-15
6	8092845	7945550	NM_018494	LRDD	0.727098	1.604734e-18	2.780523e-14	4.634205e-15
7	8092845	8133704	NM_001110199	SRRM3	0.726217	1.847704e-18	3.201517e-14	4.573595e-15
8	8092845	8037785	NM_033258	GNG8	0.715696	9.536945e-18	1.652466e-13	2.065583e-14
9	8092845	7911435	NM_001014980	FAM132A	0.709757	2.332087e-17	4.040808e-13	4.489786e-14
10	8092845	7947928	NM_031909	C1QTNF4	0.708335	2.879357e-17	4.989061e-13	4.989061e-14
11	8092845	8082289	NM_152889	CHST13	0.707105	3.451264e-17	5.980005e-13	5.436368e-14
12	8092845	7896985	NM_080875	MIB2	0.706648	3.691161e-17	6.395675e-13	5.329729e-14
13	8092845	8138757	NM_018951	HOXA10	0.706140	3.976256e-17	6.889658e-13	5.299737e-14
14	8092845	7935903	NM_006993	NPM3	0.705766	4.200150e-17	7.277599e-13	5.198285e-14
15	8092845	8114550	NM_004883	NRG2	0.704874	4.784020e-17	8.289272e-13	5.526181e-14
16	8092845	8042558	NM_024933	ANKRD53	0.704161	5.307174e-17	9.195741e-13	5.747338e-14
17	8092845	8014700	NM_001130677	C17orf96	0.703686	5.685768e-17	9.851729e-13	5.795135e-14
18	8092845	8033455	ENST00000327607		0.702954	6.321264e-17	1.095285e-12	6.084919e-14
19	8092845	7952243	NM_015645	C1QTNF5	0.702648	6.606849e-17	1.144769e-12	6.025099e-14
20	8092845	7934141	NM_022146	NPFFR1	0.701251	8.076894e-17	1.399483e-12	6.997417e-14
21	8092845	7931097	NM_002775	HTRA1	0.700235	9.341782e-17	1.618651e-12	7.707860e-14
22	8092845	8112072	NM_021147	CCNO	0.700129	9.484411e-17	1.643364e-12	7.469836e-14
23	8092845	7911750	NM_001010926	HES5	0.699506	1.036594e-16	1.796106e-12	7.809156e-14
24	8092845	7956395	NM_007224	NXPH4	0.699359	1.058552e-16	1.834152e-12	7.642301e-14
25	8092845	8121209	NM_005604	POU3F2	0.698813	1.143947e-16	1.982118e-12	7.928471e-14
26	8092845	8153868	BC073936	C8orf82	0.698177	1.252051e-16	2.169430e-12	8.343960e-14
27	8092845	8153862	NM_001024678	LRRC24	0.698033	1.277828e-16	2.214093e-12	8.200345e-14
28	8092845	7935983	NM_005029	PITX3	0.697832	1.314633e-16	2.277865e-12	8.135233e-14
29	8092845	7991939	NM_145294	WDR90	0.697676	1.343972e-16	2.328700e-12	8.029999e-14
30	8092845	8032623	NM_001060	TBXA2R	0.697481	1.381694e-16	2.394061e-12	7.980202e-14
31	8092845	8030251	NM_017636	TRPM4	0.696681	1.546717e-16	2.679997e-12	8.645152e-14
32	8092845	8005328	NM_016239	MYO15A	0.696363	1.617427e-16	2.802516e-12	8.757862e-14
33	8092845	8093826	NM_000683	ADRA2C	0.695681	1.780084e-16	3.084352e-12	9.346521e-14
34	8092845	8099406	NM_001189	NKX3-2	0.695544	1.814515e-16	3.144011e-12	9.247090e-14
35	8092845	8093440	NM_001004356	FGFRL1	0.694452	2.114026e-16	3.662972e-12	1.046564e-13
36	8092845	8008372	NM_017957	EPN3	0.694389	2.132656e-16	3.695253e-12	1.026459e-13
37	8092845	7998634	NM_001009606	HS3ST6	0.693950	2.267170e-16	3.928325e-12	1.061709e-13
38	8092845	8115691	NM_003062	SLIT3	0.693325	2.473213e-16	4.285336e-12	1.127720e-13
39	8092845	7896779	NM_198317	KLHL17	0.692242	2.873747e-16	4.979341e-12	1.276754e-13
40	8092845	7927307	NM_001630	ANXA8L2	0.691628	3.127750e-16	5.419453e-12	1.354863e-13
41	8092845	8033462	NM_206833	CTXN1	0.691589	3.144774e-16	5.448950e-12	1.329012e-13
42	8092845	8042537	NM_001692	ATP6V1B1	0.691362	3.244906e-16	5.622449e-12	1.338678e-13
43	8092845	8023990	NM_020637	FGF22	0.690983	3.418356e-16	5.922986e-12	1.377439e-13
44	8092845	7966690	NM_016569	TBX3	0.690517	3.644509e-16	6.314840e-12	1.435191e-13
45	8092845	8137330	ENST00000356058		0.690186	3.814344e-16	6.609115e-12	1.468692e-13
46	8092845	8137537	NM_001427	EN2	0.689515	4.181052e-16	7.244509e-12	1.574893e-13
47	8092845	7930482	NM_000681	ADRA2A	0.688738	4.649516e-16	8.056216e-12	1.714089e-13
48	8092845	8130715	NM_175922	PRR18	0.688537	4.778392e-16	8.279520e-12	1.724900e-13
49	8092845	8010696	NM_148896	NPB	0.688278	4.949945e-16	8.576770e-12	1.750361e-13
50	8092845	8019693	NM_148896	NPB	0.688278	4.949945e-16	8.576770e-12	1.715354e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation