[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
5605	8118622	NM_014234	HSD17B8		hydroxysteroid (17-beta) dehydrogenase 8
5606	8178234	NM_014234	HSD17B8		hydroxysteroid (17-beta) dehydrogenase 8
5607	8179534	NM_014234	HSD17B8		hydroxysteroid (17-beta) dehydrogenase 8

Fetching correlation data, please wait...
Getting list of correlations for id 5605.
Getting list of p-values for id 5605.
1 of 3 done.
Getting list of correlations for id 5606.
Getting list of p-values for id 5606.
2 of 3 done.
Getting list of correlations for id 5607.
Getting list of p-values for id 5607.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.182 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8118622	8178234	NM_014234	HSD17B8	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8178234	8118622	NM_014234	HSD17B8	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8118622	8179534	NM_014234	HSD17B8	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
4	8178234	8179534	NM_014234	HSD17B8	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
5	8179534	8118622	NM_014234	HSD17B8	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
6	8179534	8178234	NM_014234	HSD17B8	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
7	8179534	8050813	NM_175629	DNMT3A	0.575374	1.361830e-10	7.078929e-6	1.011276e-6
8	8118622	8050813	NM_175629	DNMT3A	0.575374	1.361830e-10	7.078929e-6	8.848661e-7
9	8178234	8050813	NM_175629	DNMT3A	0.575374	1.361830e-10	7.078929e-6	7.865476e-7
10	8178234	7992021	NM_005861	STUB1	0.560673	4.969398e-10	2.583143e-5	2.583143e-6
11	8118622	7992021	NM_005861	STUB1	0.560673	4.969398e-10	2.583143e-5	2.348311e-6
12	8179534	7992021	NM_005861	STUB1	0.560673	4.969398e-10	2.583143e-5	2.152619e-6
13	8178234	8099029	NM_024309	TNIP2	0.538407	3.142347e-9	1.633423e-4	1.256479e-5
14	8118622	8099029	NM_024309	TNIP2	0.538407	3.142347e-9	1.633423e-4	1.166731e-5
15	8179534	8099029	NM_024309	TNIP2	0.538407	3.142347e-9	1.633423e-4	1.088949e-5
16	8179534	8158544	NM_014064	METTL11A	0.508919	2.967449e-8	1.542510e-3	9.640685e-5
17	8118622	8158544	NM_014064	METTL11A	0.508919	2.967449e-8	1.542510e-3	9.073586e-5
18	8178234	8158544	NM_014064	METTL11A	0.508919	2.967449e-8	1.542510e-3	8.569498e-5
19	8118622	8032455	NM_018049	PLEKHJ1	0.504163	4.179713e-8	2.172656e-3	1.143503e-4
20	8179534	8032455	NM_018049	PLEKHJ1	0.504163	4.179713e-8	2.172656e-3	1.086328e-4
21	8178234	8032455	NM_018049	PLEKHJ1	0.504163	4.179713e-8	2.172656e-3	1.034598e-4
22	8179534	8143714	NM_015694	ZNF777	0.502811	4.602708e-8	2.392534e-3	1.087515e-4
23	8118622	8143714	NM_015694	ZNF777	0.502811	4.602708e-8	2.392534e-3	1.040232e-4
24	8178234	8143714	NM_015694	ZNF777	0.502811	4.602708e-8	2.392534e-3	9.968891e-5
25	8118622	8038395	NM_015953	NOSIP	0.501819	4.938932e-8	2.567306e-3	1.026923e-4
26	8178234	8038395	NM_015953	NOSIP	0.501819	4.938932e-8	2.567306e-3	9.874255e-5
27	8179534	8038395	NM_015953	NOSIP	0.501819	4.938932e-8	2.567306e-3	9.508542e-5
28	8118622	8091552			0.499124	5.974451e-8	3.105580e-3	1.109136e-4
29	8179534	8091552			0.499124	5.974451e-8	3.105580e-3	1.070889e-4
30	8178234	8091552			0.499124	5.974451e-8	3.105580e-3	1.035193e-4
31	8178234	7984985	NM_001038640	GOLGA6A	0.498182	6.383323e-8	3.318115e-3	1.070360e-4
32	8118622	7984985	NM_001038640	GOLGA6A	0.498182	6.383323e-8	3.318115e-3	1.036911e-4
33	8179534	7984985	NM_001038640	GOLGA6A	0.498182	6.383323e-8	3.318115e-3	1.005489e-4
34	8118622	7941927	NM_003977	AIP	0.497866	6.526129e-8	3.392347e-3	9.977491e-5
35	8179534	7941927	NM_003977	AIP	0.497866	6.526129e-8	3.392347e-3	9.692420e-5
36	8178234	7941927	NM_003977	AIP	0.497866	6.526129e-8	3.392347e-3	9.423186e-5
37	8118622	8025788	NM_001128849	SMARCA4	0.491231	1.033728e-7	5.373422e-3	1.452276e-4
38	8179534	8025788	NM_001128849	SMARCA4	0.491231	1.033728e-7	5.373422e-3	1.414058e-4
39	8178234	8025788	NM_001128849	SMARCA4	0.491231	1.033728e-7	5.373422e-3	1.377801e-4
40	8179534	8163525	NR_027261	POLE3	0.488063	1.283126e-7	6.669818e-3	1.667455e-4
41	8178234	8163525	NR_027261	POLE3	0.488063	1.283126e-7	6.669818e-3	1.626785e-4
42	8118622	8163525	NR_027261	POLE3	0.488063	1.283126e-7	6.669818e-3	1.588052e-4
43	8118622	7991989	NM_138769	RHOT2	0.487690	1.316053e-7	6.840977e-3	1.590925e-4
44	8178234	7991989	NM_138769	RHOT2	0.487690	1.316053e-7	6.840977e-3	1.554768e-4
45	8179534	7991989	NM_138769	RHOT2	0.487690	1.316053e-7	6.840977e-3	1.520217e-4
46	8118622	8076185	NM_175709	CBX7	0.487119	1.367909e-7	7.110528e-3	1.545767e-4
47	8179534	8076185	NM_175709	CBX7	0.487119	1.367909e-7	7.110528e-3	1.512878e-4
48	8178234	8076185	NM_175709	CBX7	0.487119	1.367909e-7	7.110528e-3	1.481360e-4
49	8178234	8033135	NM_002096	GTF2F1	0.486660	1.411053e-7	7.334794e-3	1.496897e-4
50	8179534	8033135	NM_002096	GTF2F1	0.486660	1.411053e-7	7.334794e-3	1.466959e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation