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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id Label1 AccNum GeneSym Info Gene Name
3918 8170402 NM_016153 HSFX1 link to infopage heat shock transcription factor family, X linked 1
3919 8175616 NM_016153 HSFX1 link to infopage heat shock transcription factor family, X linked 1

Fetching correlation data, please wait...
Getting list of correlations for id 3918.
Getting list of p-values for id 3918.
1 of 2 done.
Getting list of correlations for id 3919.
Getting list of p-values for id 3919.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.199 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8170402 8175616 NM_016153 HSFX1 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
2 8175616 8170402 NM_016153 HSFX1 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
3 8170402 8043937 NM_017546 C2orf29 link to infopage -0.641994 1.578404e-13 5.469801e-9 1.823267e-9
4 8175616 8043937 NM_017546 C2orf29 link to infopage -0.641994 1.578404e-13 5.469801e-9 1.367450e-9
5 8175616 8089128 NM_014820 TOMM70A link to infopage -0.631633 5.029004e-13 1.742751e-8 3.485502e-9
6 8170402 8089128 NM_014820 TOMM70A link to infopage -0.631633 5.029004e-13 1.742751e-8 2.904585e-9
7 8170402 7970033 NM_001846 COL4A2 link to infopage 0.627459 7.923922e-13 2.745956e-8 3.922794e-9
8 8175616 7970033 NM_001846 COL4A2 link to infopage 0.627459 7.923922e-13 2.745956e-8 3.432445e-9
9 8170402 7932862 ENST00000410143 link to infopage 0.612756 3.728721e-12 1.292151e-7 1.435723e-8
10 8175616 7932862 ENST00000410143 link to infopage 0.612756 3.728721e-12 1.292151e-7 1.292151e-8
11 8170402 8093518 NM_000142 FGFR3 link to infopage 0.609935 4.973516e-12 1.723522e-7 1.566838e-8
12 8175616 8093518 NM_000142 FGFR3 link to infopage 0.609935 4.973516e-12 1.723522e-7 1.436268e-8
13 8170402 7899101 NM_006314 CNKSR1 link to infopage 0.609152 5.384439e-12 1.865924e-7 1.435326e-8
14 8175616 7899101 NM_006314 CNKSR1 link to infopage 0.609152 5.384439e-12 1.865924e-7 1.332803e-8
15 8175616 7914361 NM_001856 COL16A1 link to infopage 0.608487 5.759487e-12 1.995893e-7 1.330595e-8
16 8170402 7914361 NM_001856 COL16A1 link to infopage 0.608487 5.759487e-12 1.995893e-7 1.247433e-8
17 8175616 8108435 NM_181838 UBE2D2 link to infopage -0.606681 6.909245e-12 2.394330e-7 1.408429e-8
18 8170402 8108435 NM_181838 UBE2D2 link to infopage -0.606681 6.909245e-12 2.394330e-7 1.330183e-8
19 8170402 7961489 NM_016312 WBP11 link to infopage -0.604424 8.659814e-12 3.000972e-7 1.579459e-8
20 8175616 7961489 NM_016312 WBP11 link to infopage -0.604424 8.659814e-12 3.000972e-7 1.500486e-8
21 8170402 8090091 NM_198402 PTPLB link to infopage -0.602534 1.044770e-11 3.620547e-7 1.724070e-8
22 8175616 8090091 NM_198402 PTPLB link to infopage -0.602534 1.044770e-11 3.620547e-7 1.645703e-8
23 8170402 8161192 NM_194328 RNF38 link to infopage -0.599171 1.454816e-11 5.041519e-7 2.191965e-8
24 8175616 8161192 NM_194328 RNF38 link to infopage -0.599171 1.454816e-11 5.041519e-7 2.100633e-8
25 8170402 8035993 NM_019849 SLC7A10 link to infopage 0.598926 1.490018e-11 5.163509e-7 2.065404e-8
26 8175616 8035993 NM_019849 SLC7A10 link to infopage 0.598926 1.490018e-11 5.163509e-7 1.985965e-8
27 8175616 8026265 NM_080864 RLN3 link to infopage 0.598886 1.495926e-11 5.183982e-7 1.919993e-8
28 8170402 8026265 NM_080864 RLN3 link to infopage 0.598886 1.495926e-11 5.183982e-7 1.851422e-8
29 8175616 8014865 NM_006160 NEUROD2 link to infopage 0.598243 1.592815e-11 5.519741e-7 1.903359e-8
30 8170402 8014865 NM_006160 NEUROD2 link to infopage 0.598243 1.592815e-11 5.519741e-7 1.839914e-8
31 8170402 8067011 NM_015339 ADNP link to infopage -0.595167 2.146925e-11 7.439953e-7 2.399985e-8
32 8175616 8067011 NM_015339 ADNP link to infopage -0.595167 2.146925e-11 7.439953e-7 2.324985e-8
33 8175616 8095048 NM_030917 FIP1L1 link to infopage -0.594163 2.364973e-11 8.195577e-7 2.483508e-8
34 8170402 8095048 NM_030917 FIP1L1 link to infopage -0.594163 2.364973e-11 8.195577e-7 2.410464e-8
35 8175616 7987792 NM_178034 PLA2G4D link to infopage 0.591913 2.934054e-11 1.016767e-6 2.905049e-8
36 8170402 7987792 NM_178034 PLA2G4D link to infopage 0.591913 2.934054e-11 1.016767e-6 2.824353e-8
37 8175616 7921088 NM_006617 NES link to infopage 0.591855 2.950360e-11 1.022418e-6 2.763291e-8
38 8170402 7921088 NM_006617 NES link to infopage 0.591855 2.950360e-11 1.022418e-6 2.690573e-8
39 8175616 7988987 NM_004498 ONECUT1 link to infopage 0.591446 3.067710e-11 1.063084e-6 2.725857e-8
40 8170402 7988987 NM_004498 ONECUT1 link to infopage 0.591446 3.067710e-11 1.063084e-6 2.657711e-8
41 8175616 8049509 NM_015893 PRLH link to infopage 0.589125 3.823848e-11 1.325116e-6 3.231991e-8
42 8170402 8049509 NM_015893 PRLH link to infopage 0.589125 3.823848e-11 1.325116e-6 3.155039e-8
43 8170402 8166899 NM_022567 NYX link to infopage 0.588282 4.140342e-11 1.434794e-6 3.336731e-8
44 8175616 8166899 NM_022567 NYX link to infopage 0.588282 4.140342e-11 1.434794e-6 3.260896e-8
45 8170402 8063283 NM_001316 CSE1L link to infopage -0.587393 4.501885e-11 1.560083e-6 3.466851e-8
46 8175616 8063283 NM_001316 CSE1L link to infopage -0.587393 4.501885e-11 1.560083e-6 3.391485e-8
47 8175616 8095574 NM_000788 DCK link to infopage -0.586767 4.774415e-11 1.654526e-6 3.520268e-8
48 8170402 8095574 NM_000788 DCK link to infopage -0.586767 4.774415e-11 1.654526e-6 3.446929e-8
49 8175616 8115691 NM_003062 SLIT3 link to infopage 0.586130 5.067965e-11 1.756253e-6 3.584189e-8
50 8170402 8115691 NM_003062 SLIT3 link to infopage 0.586130 5.067965e-11 1.756253e-6 3.512505e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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