[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2065	8009727	NM_001545	ICT1		immature colon carcinoma transcript 1

Fetching correlation data, please wait...
Getting list of correlations for id 2065.
Getting list of p-values for id 2065.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.092 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8009727	8011765	NM_004890	SPAG7	0.590424	3.380747e-11	5.857820e-7	5.857820e-7
2	8009727	8027205	NM_015965	NDUFA13	0.540051	2.754987e-9	4.773566e-5	2.386783e-5
3	8009727	7924956	NM_012089	ABCB10	0.528796	6.689157e-9	1.159030e-4	3.863434e-5
4	8009727	8066776	NM_033550	TP53RK	0.526094	8.236887e-9	1.427205e-4	3.568013e-5
5	8009727	8029969	NM_003009	SEPW1	0.517814	1.541517e-8	2.670987e-4	5.341975e-5
6	8009727	8117422	NM_003540	HIST1H4F	0.515516	1.828965e-8	3.169048e-4	5.281747e-5
7	8009727	8172453	NM_005834	TIMM17B	0.514549	1.964754e-8	3.404328e-4	4.863326e-5
8	8009727	8010702	NM_024083	ASPSCR1	0.508514	3.055797e-8	5.294780e-4	6.618475e-5
9	8009727	8019376	NM_022156	DUS1L	0.505621	3.765109e-8	6.523804e-4	7.248671e-5
10	8009727	7949377	NM_001997	FAU	0.504864	3.975165e-8	6.887768e-4	6.887768e-5
11	8009727	7908841	NM_032105	PPP1R12B	-0.504696	4.023241e-8	6.971069e-4	6.337335e-5
12	8009727	8158544	NM_014064	METTL11A	0.501325	5.115010e-8	8.862778e-4	7.385648e-5
13	8009727	8033025	NM_020175	DUS3L	0.500007	5.614123e-8	9.727590e-4	7.482762e-5
14	8009727	7913990	NM_022078	GPATCH3	0.499786	5.702567e-8	9.880838e-4	7.057742e-5
15	8009727	7964658	ENST00000363426		0.497911	6.505560e-8	1.127218e-3	7.514789e-5
16	8009727	7948836	NM_001080501	TMEM223	0.495174	7.874406e-8	1.364398e-3	8.527490e-5
17	8009727	7992043	BC001181	FAM173A	0.494628	8.178477e-8	1.417085e-3	8.335792e-5
18	8009727	7983922			-0.494549	8.223215e-8	1.424836e-3	7.915758e-5
19	8009727	7986293	NM_018349	MCTP2	-0.488734	1.225984e-7	2.124262e-3	1.118033e-4
20	8009727	8074020	NM_031454	SELO	0.486802	1.397644e-7	2.421697e-3	1.210849e-4
21	8009727	8177011	NM_004192	ASMTL	0.486332	1.442715e-7	2.499793e-3	1.190377e-4
22	8009727	7938295	NM_000990	RPL27A	0.484657	1.614986e-7	2.798286e-3	1.271948e-4
23	8009727	7940667	NR_004390	SNORA57	0.481316	2.018877e-7	3.498108e-3	1.520917e-4
24	8009727	8032284	NM_006830	UQCR11	0.479242	2.316086e-7	4.013082e-3	1.672118e-4
25	8009727	8124385	NM_003544	HIST1H4B	0.476005	2.864671e-7	4.963616e-3	1.985446e-4
26	8009727	8074980	NM_000853	GSTT1	0.475794	2.904424e-7	5.032495e-3	1.935575e-4
27	8009727	8130003	NM_031287	SF3B5	0.474660	3.127339e-7	5.418741e-3	2.006941e-4
28	8009727	7960124	NM_138575	PGAM5	0.474296	3.202271e-7	5.548574e-3	1.981634e-4
29	8009727	8083011	NM_020191	MRPS22	0.472855	3.515921e-7	6.092037e-3	2.100702e-4
30	8009727	7941296	NM_006396	SSSCA1	0.472391	3.622868e-7	6.277344e-3	2.092448e-4
31	8009727	7940781	NM_201428	RTN3	-0.469784	4.284253e-7	7.423325e-3	2.394621e-4
32	8009727	8072979	NM_021974	POLR2F	0.469507	4.361056e-7	7.556401e-3	2.361375e-4
33	8009727	8099029	NM_024309	TNIP2	0.469039	4.493452e-7	7.785804e-3	2.359335e-4
34	8009727	8165552	NM_001130969	NELF	0.465787	5.525804e-7	9.574561e-3	2.816047e-4
35	8009727	8155073	NM_174923	CCDC107	0.464627	5.945598e-7	1.030194e-2	2.943411e-4
36	8009727	8146500	NM_002350	LYN	-0.464456	6.009787e-7	1.041316e-2	2.892544e-4
37	8009727	7965359	NM_001001323	ATP2B1	-0.461725	7.132808e-7	1.235902e-2	3.340275e-4
38	8009727	8148728	NM_001916	CYC1	0.460785	7.563381e-7	1.310507e-2	3.448703e-4
39	8009727	8032761	NM_030662	MAP2K2	0.460611	7.645538e-7	1.324742e-2	3.396775e-4
40	8009727	8080084	NM_006010	MANF	0.459116	8.388882e-7	1.453542e-2	3.633854e-4
41	8009727	7949746	NM_021173	POLD4	0.458880	8.512568e-7	1.474973e-2	3.597494e-4
42	8009727	8060257	NM_006374	STK25	0.458784	8.563342e-7	1.483770e-2	3.532787e-4
43	8009727	8037389	NM_019108	C19orf61	0.458217	8.868459e-7	1.536638e-2	3.573576e-4
44	8009727	8040831	NM_016085	C2orf28	0.457780	9.110758e-7	1.578621e-2	3.587775e-4
45	8009727	7998449	NM_001001410	C16orf42	0.457040	9.536012e-7	1.652305e-2	3.671789e-4
46	8009727	8171119	NM_004192	ASMTL	0.456902	9.616933e-7	1.666326e-2	3.622448e-4
47	8009727	8074498	NM_006440	TXNRD2	0.455675	1.036947e-6	1.796718e-2	3.822804e-4
48	8009727	7939839	NM_002843	PTPRJ	-0.454097	1.141876e-6	1.978529e-2	4.121936e-4
49	8009727	8024273	NM_024407	NDUFS7	0.452147	1.285523e-6	2.227426e-2	4.545768e-4
50	8009727	8033002	NM_004793	LONP1	0.451439	1.341798e-6	2.324934e-2	4.649867e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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