[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5674	8033362	NM_000208	INSR		insulin receptor

Fetching correlation data, please wait...
Getting list of correlations for id 5674.
Getting list of p-values for id 5674.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.125 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8033362	7928411	NM_015037	KIAA0913	0.645404	1.067498e-13	1.849654e-9	1.849654e-9
2	8033362	8033587	NM_032152	PRAM1	0.644086	1.242374e-13	2.152662e-9	1.076331e-9
3	8033362	8027352			-0.618220	2.116730e-12	3.667658e-8	1.222553e-8
4	8033362	8002152	NM_005072	SLC12A4	0.610248	4.817465e-12	8.347221e-8	2.086805e-8
5	8033362	7942439	NM_032871	RELT	0.609379	5.262113e-12	9.117662e-8	1.823532e-8
6	8033362	7992347	NM_015133	MAPK8IP3	0.603728	9.280421e-12	1.608019e-7	2.680031e-8
7	8033362	8010638	NM_004712	HGS	0.592574	2.754284e-11	4.772349e-7	6.817641e-8
8	8033362	8116316	NM_014275	MGAT4B	0.592385	2.804639e-11	4.859598e-7	6.074498e-8
9	8033362	7956301	NM_002332	LRP1	0.590070	3.496529e-11	6.058436e-7	6.731596e-8
10	8033362	8090420	NM_016372	TPRA1	0.588157	4.189719e-11	7.259526e-7	7.259526e-8
11	8033362	7951497	NM_002519	NPAT	-0.586597	4.851296e-11	8.405841e-7	7.641673e-8
12	8033362	8039120	NM_206818	OSCAR	0.585602	5.324372e-11	9.225540e-7	7.687950e-8
13	8033362	8062695	NM_006275	SRSF6	-0.585405	5.423132e-11	9.396660e-7	7.228200e-8
14	8033362	8084219	NM_017644	KLHL24	-0.585077	5.591899e-11	9.689083e-7	6.920773e-8
15	8033362	8110327	NM_006480	RGS14	0.583529	6.457474e-11	1.118886e-6	7.459243e-8
16	8033362	8132980	NM_001080495	TNRC18	0.583174	6.673927e-11	1.156391e-6	7.227446e-8
17	8033362	8060353	NM_031229	RBCK1	0.580811	8.299775e-11	1.438102e-6	8.459424e-8
18	8033362	7898483	NM_018125	ARHGEF10L	0.580528	8.518697e-11	1.476035e-6	8.200192e-8
19	8033362	8026217	NM_017721	CC2D1A	0.579289	9.542804e-11	1.653482e-6	8.702535e-8
20	8033362	8048647	NM_052902	STK11IP	0.578598	1.016413e-10	1.761138e-6	8.805692e-8
21	8033362	8002342	ENST00000458775		-0.577394	1.134180e-10	1.965194e-6	9.358067e-8
22	8033362	8167457	NM_014008	CCDC22	0.571918	1.856848e-10	3.217361e-6	1.462437e-7
23	8033362	7949172	NM_004579	MAP4K2	0.569655	2.270474e-10	3.934050e-6	1.710457e-7
24	8033362	8033118	NM_005934	MLLT1	0.569448	2.312455e-10	4.006791e-6	1.669496e-7
25	8033362	7906223	NM_015997	C1orf66	0.569251	2.353000e-10	4.077043e-6	1.630817e-7
26	8033362	8039316	NM_017607	PPP1R12C	0.568699	2.470515e-10	4.280660e-6	1.646408e-7
27	8033362	8024347	NM_079834	SCAMP4	0.568255	2.569267e-10	4.451769e-6	1.648803e-7
28	8033362	8126035	NM_020939	CPNE5	0.568128	2.598105e-10	4.501737e-6	1.607763e-7
29	8033362	8016215	NM_199282	ARHGAP27	0.566755	2.931342e-10	5.079137e-6	1.751426e-7
30	8033362	8099670	NM_001130726	CCDC149	0.566623	2.965338e-10	5.138042e-6	1.712681e-7
31	8033362	7959957	NM_003565	ULK1	0.565231	3.349180e-10	5.803124e-6	1.871975e-7
32	8033362	8089299	NM_001777	CD47	-0.565197	3.358975e-10	5.820095e-6	1.818780e-7
33	8033362	8026830	NM_015122	FCHO1	0.564933	3.437468e-10	5.956101e-6	1.804879e-7
34	8033362	8009875	NR_003587	MYO15B	0.561904	4.469518e-10	7.744334e-6	2.277745e-7
35	8033362	7949277	NM_015104	ATG2A	0.561207	4.746322e-10	8.223952e-6	2.349701e-7
36	8033362	8011480	NM_032294	CAMKK1	0.560432	5.073366e-10	8.790622e-6	2.441839e-7
37	8033362	8009796	NM_014738	KIAA0195	0.560319	5.122688e-10	8.876082e-6	2.398941e-7
38	8033362	7986110	NM_002005	FES	0.558458	6.006628e-10	1.040768e-5	2.738864e-7
39	8033362	8002470	NM_032821	HYDIN	0.558151	6.165958e-10	1.068376e-5	2.739425e-7
40	8033362	8124551	NR_002936	LOC222699	0.554701	8.258930e-10	1.431025e-5	3.577562e-7
41	8033362	8080344	NM_015136	STAB1	0.554259	8.571717e-10	1.485221e-5	3.622491e-7
42	8033362	8001981	NM_013241	FHOD1	0.553996	8.763273e-10	1.518412e-5	3.615267e-7
43	8033362	7985226	NM_206839	MORF4L1	-0.553489	9.144397e-10	1.584450e-5	3.684766e-7
44	8033362	8038458	NM_007254	PNKP	0.551687	1.063255e-9	1.842302e-5	4.187050e-7
45	8033362	7915277	NM_005376	MYCL1	0.551314	1.096822e-9	1.900463e-5	4.223251e-7
46	8033362	8175933	NM_002910	RENBP	0.550849	1.140133e-9	1.975508e-5	4.294583e-7
47	8033362	8143919	NM_001003802	SMARCD3	0.550678	1.156425e-9	2.003738e-5	4.263272e-7
48	8033362	8076937	NM_032019	HDAC10	0.549469	1.278421e-9	2.215119e-5	4.614832e-7
49	8033362	8030383	NM_020650	RCN3	0.549402	1.285541e-9	2.227456e-5	4.545830e-7
50	8033362	8000690	ENST00000458775		-0.548831	1.347668e-9	2.335105e-5	4.670209e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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