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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
3114 7953274 NM_000217 KCNA1 link to infopage potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia)

Fetching correlation data, please wait...
Getting list of correlations for id 3114.
Getting list of p-values for id 3114.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.143 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7953274 8137959 NM_001080495 TNRC18 link to infopage 0.794001 5.348246e-24 9.266906e-20 9.266906e-20
2 7953274 8110546 NM_014757 MAML1 link to infopage 0.764012 2.553194e-21 4.423918e-17 2.211959e-17
3 7953274 7914232 NM_001003682 TMEM200B link to infopage 0.760259 5.181453e-21 8.977904e-17 2.992635e-17
4 7953274 7997569 NM_139174 ADAD2 link to infopage 0.758693 6.934920e-21 1.201614e-16 3.004034e-17
5 7953274 8059739 NM_024409 NPPC link to infopage 0.754106 1.608273e-20 2.786655e-16 5.573311e-17
6 7953274 8009430 NR_027283 LOC440461 link to infopage 0.748545 4.351325e-20 7.539541e-16 1.256590e-16
7 7953274 8148867 NM_145754 KIFC2 link to infopage 0.748173 4.646469e-20 8.050938e-16 1.150134e-16
8 7953274 8092520 BC137178 C3orf70 link to infopage 0.743445 1.059929e-19 1.836538e-15 2.295673e-16
9 7953274 8165453 NM_001013653 LRRC26 link to infopage 0.742955 1.153314e-19 1.998348e-15 2.220386e-16
10 7953274 8064676 NM_145762 GFRA4 link to infopage 0.742631 1.219263e-19 2.112617e-15 2.112617e-16
11 7953274 8037495 NM_145288 ZNF296 link to infopage 0.741285 1.535617e-19 2.660764e-15 2.418877e-16
12 7953274 7912004 NM_207370 GPR153 link to infopage 0.740578 1.732260e-19 3.001487e-15 2.501239e-16
13 7953274 8049567 NM_005855 RAMP1 link to infopage 0.739123 2.217515e-19 3.842288e-15 2.955606e-16
14 7953274 7997767 NM_153813 ZFPM1 link to infopage 0.738227 2.579315e-19 4.469180e-15 3.192271e-16
15 7953274 7991459 NM_020211 RGMA link to infopage 0.733911 5.297714e-19 9.179349e-15 6.119566e-16
16 7953274 7986248 AY358245 LOC643797 link to infopage 0.733698 5.487544e-19 9.508267e-15 5.942667e-16
17 7953274 8030022 NM_000836 GRIN2D link to infopage 0.732172 7.052680e-19 1.222018e-14 7.188340e-16
18 7953274 7900001 NM_178548 TFAP2E link to infopage 0.728402 1.301480e-18 2.255075e-14 1.252819e-15
19 7953274 8004763 NM_000180 GUCY2D link to infopage 0.727991 1.390572e-18 2.409445e-14 1.268129e-15
20 7953274 8039504 NM_001145176 SHISA7 link to infopage 0.727727 1.450763e-18 2.513737e-14 1.256868e-15
21 7953274 8033023 NM_001134316 PRR22 link to infopage 0.727142 1.593689e-18 2.761385e-14 1.314945e-15
22 7953274 8060505 NM_001110514 EBF4 link to infopage 0.725857 1.956730e-18 3.390427e-14 1.541103e-15
23 7953274 7902493 ENST00000410917 link to infopage 0.725560 2.051455e-18 3.554556e-14 1.545459e-15
24 7953274 8046564 NM_024501 HOXD1 link to infopage 0.725431 2.094059e-18 3.628375e-14 1.511823e-15
25 7953274 7959925 ENST00000390949 link to infopage 0.724715 2.346341e-18 4.065504e-14 1.626202e-15
26 7953274 7967705 ENST00000390949 link to infopage 0.724715 2.346341e-18 4.065504e-14 1.563656e-15
27 7953274 7926150 NM_014688 USP6NL link to infopage 0.724441 2.450575e-18 4.246111e-14 1.572634e-15
28 7953274 8052018 NM_022055 KCNK12 link to infopage 0.722596 3.277893e-18 5.679605e-14 2.028430e-15
29 7953274 7977033 NM_030943 AMN link to infopage 0.722105 3.540757e-18 6.135070e-14 2.115541e-15
30 7953274 7998902 NM_017885 HCFC1R1 link to infopage 0.721907 3.652303e-18 6.328345e-14 2.109448e-15
31 7953274 8098721 ENST00000362702 link to infopage 0.721812 3.706705e-18 6.422608e-14 2.071809e-15
32 7953274 7945781 NM_003311 PHLDA2 link to infopage 0.721640 3.808320e-18 6.598676e-14 2.062086e-15
33 7953274 7997733 NM_005251 FOXC2 link to infopage 0.720680 4.423764e-18 7.665056e-14 2.322744e-15
34 7953274 8013112 NM_016084 RASD1 link to infopage 0.720547 4.516162e-18 7.825153e-14 2.301516e-15
35 7953274 8074558 NM_023004 RTN4R link to infopage 0.719267 5.509626e-18 9.546528e-14 2.727580e-15
36 7953274 8045619 NM_015630 EPC2 link to infopage -0.719126 5.631177e-18 9.757140e-14 2.710317e-15
37 7953274 7949015 NM_001144936 C11orf95 link to infopage 0.718914 5.818270e-18 1.008132e-13 2.724680e-15
38 7953274 7937106 NM_177400 NKX6-2 link to infopage 0.716189 8.844847e-18 1.532547e-13 4.033018e-15
39 7953274 7942064 NM_015973 GAL link to infopage 0.712505 1.546095e-17 2.678918e-13 6.869021e-15
40 7953274 7992269 ENST00000301714 link to infopage 0.712038 1.658481e-17 2.873650e-13 7.184124e-15
41 7953274 7898431 NM_016233 PADI3 link to infopage 0.711712 1.741632e-17 3.017727e-13 7.360309e-15
42 7953274 8074063 NM_024866 ADM2 link to infopage 0.708433 2.837878e-17 4.917191e-13 1.170760e-14
43 7953274 8133704 NM_001110199 SRRM3 link to infopage 0.708250 2.915428e-17 5.051563e-13 1.174782e-14
44 7953274 7991332 NM_018670 MESP1 link to infopage 0.707276 3.365841e-17 5.831993e-13 1.325453e-14
45 7953274 7896779 NM_198317 KLHL17 link to infopage 0.707030 3.489963e-17 6.047058e-13 1.343791e-14
46 7953274 8110562 NM_145867 LTC4S link to infopage 0.706414 3.819865e-17 6.618680e-13 1.438844e-14
47 7953274 7971663 NM_198989 DLEU7 link to infopage 0.705891 4.124340e-17 7.146243e-13 1.520477e-14
48 7953274 8055239 NM_032545 CFC1 link to infopage 0.705686 4.249662e-17 7.363390e-13 1.534040e-14
49 7953274 8138770 NM_000522 HOXA13 link to infopage 0.705666 4.262218e-17 7.385146e-13 1.507173e-14
50 7953274 7947928 NM_031909 C1QTNF4 link to infopage 0.705468 4.386847e-17 7.601089e-13 1.520218e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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