[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7507	7969414	NM_001730	KLF5		Kruppel-like factor 5 (intestinal)

Fetching correlation data, please wait...
Getting list of correlations for id 7507.
Getting list of p-values for id 7507.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.132 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7969414	8024038	NM_001700	AZU1	0.663117	1.289555e-14	2.234412e-10	2.234412e-10
2	7969414	8132978	ENST00000447142		0.655246	3.356580e-14	5.815945e-10	2.907973e-10
3	7969414	8049538	NM_001137550	LRRFIP1	0.654194	3.806018e-14	6.594687e-10	2.198229e-10
4	7969414	8039524	NM_152600	ZNF579	0.652806	4.489344e-14	7.778686e-10	1.944672e-10
5	7969414	7931181	NM_001105574	HMX3	0.652450	4.682977e-14	8.114195e-10	1.622839e-10
6	7969414	7992302	NM_020825	CRAMP1L	0.649285	6.798502e-14	1.177976e-9	1.963294e-10
7	7969414	7955578	NM_181711	GRASP	0.648519	7.435646e-14	1.288374e-9	1.840535e-10
8	7969414	8024250	NM_001405	EFNA2	0.646662	9.228845e-14	1.599082e-9	1.998852e-10
9	7969414	8024655	NM_001135580	C19orf71	0.644376	1.201631e-13	2.082065e-9	2.313406e-10
10	7969414	8009517	NM_000346	SOX9	0.642408	1.505643e-13	2.608827e-9	2.608827e-10
11	7969414	7940022	NM_178570	RTN4RL2	0.642013	1.574972e-13	2.728955e-9	2.480868e-10
12	7969414	8048460	NM_003936	CDK5R2	0.640710	1.826547e-13	3.164859e-9	2.637382e-10
13	7969414	8072931	NM_014291	GCAT	0.638150	2.438674e-13	4.225490e-9	3.250377e-10
14	7969414	7997767	NM_153813	ZFPM1	0.636807	2.834825e-13	4.911901e-9	3.508500e-10
15	7969414	8073992	NM_052839	PANX2	0.636382	2.972696e-13	5.150790e-9	3.433860e-10
16	7969414	8133335	NM_003508	FZD9	0.636067	3.079228e-13	5.335378e-9	3.334611e-10
17	7969414	7944530	NM_178507	OAF	0.635997	3.103263e-13	5.377024e-9	3.162955e-10
18	7969414	7952752	NM_007037	ADAMTS8	0.634189	3.793742e-13	6.573418e-9	3.651899e-10
19	7969414	7941594	NM_153266	TMEM151A	0.630713	5.562231e-13	9.637678e-9	5.072462e-10
20	7969414	8117165	NM_003107	SOX4	0.629794	6.149622e-13	1.065545e-8	5.327725e-10
21	7969414	8032088	NM_214710	PRSSL1	0.627498	7.891137e-13	1.367297e-8	6.510940e-10
22	7969414	7995668	NM_005853	IRX5	0.626474	8.813044e-13	1.527036e-8	6.941073e-10
23	7969414	7992049	NM_207112	HAGHL	0.624941	1.039149e-12	1.800533e-8	7.828403e-10
24	7969414	8165538	NM_001033113	ENTPD8	0.624883	1.045556e-12	1.811635e-8	7.548478e-10
25	7969414	8092468	NM_033259	CAMK2N2	0.624670	1.069723e-12	1.853509e-8	7.414037e-10
26	7969414	8148867	NM_145754	KIFC2	0.624001	1.148988e-12	1.990851e-8	7.657121e-10
27	7969414	8162472	NM_021570	BARX1	0.623962	1.153831e-12	1.999242e-8	7.404602e-10
28	7969414	7929932	NM_030929	KAZALD1	0.622301	1.376991e-12	2.385911e-8	8.521112e-10
29	7969414	8137959	NM_001080495	TNRC18	0.621213	1.545262e-12	2.677475e-8	9.232673e-10
30	7969414	8064676	NM_145762	GFRA4	0.620861	1.603808e-12	2.778917e-8	9.263058e-10
31	7969414	8144317	NM_014867	KBTBD11	0.620856	1.604540e-12	2.780186e-8	8.968342e-10
32	7969414	8076747	AK123383	LOC642648	0.619993	1.757375e-12	3.045004e-8	9.515639e-10
33	7969414	8031617	NM_018337	ZNF444	0.619693	1.813867e-12	3.142888e-8	9.523902e-10
34	7969414	8104122	NM_033178	DUX4	0.619484	1.854068e-12	3.212544e-8	9.448660e-10
35	7969414	8121861	NM_181782	NCOA7	-0.619046	1.941251e-12	3.363605e-8	9.610300e-10
36	7969414	8143941	NM_198285	WDR86	0.618698	2.013442e-12	3.488692e-8	9.690810e-10
37	7969414	7955112	NM_181788	H1FNT	0.617700	2.235159e-12	3.872860e-8	1.046719e-9
38	7969414	8061303	NM_002196	INSM1	0.617371	2.313033e-12	4.007793e-8	1.054682e-9
39	7969414	7934544	NM_144589	COMTD1	0.616726	2.473970e-12	4.286648e-8	1.099141e-9
40	7969414	8153101	NM_152888	COL22A1	0.616646	2.494582e-12	4.322363e-8	1.080591e-9
41	7969414	8087852	NM_017442	TLR9	0.616593	2.508369e-12	4.346250e-8	1.060061e-9
42	7969414	8113094	NM_153216	POU5F2	0.615347	2.854510e-12	4.946010e-8	1.177621e-9
43	7969414	7952893	BC024764	IQSEC3	0.614587	3.088029e-12	5.350627e-8	1.244332e-9
44	7969414	8032465	NM_144616	JSRP1	0.613882	3.320892e-12	5.754110e-8	1.307752e-9
45	7969414	8099406	NM_001189	NKX3-2	0.612787	3.716834e-12	6.440158e-8	1.431146e-9
46	7969414	7929649	NM_024954	UBTD1	0.612618	3.781709e-12	6.552567e-8	1.424471e-9
47	7969414	7979876	ENST00000413777		0.612371	3.878676e-12	6.720583e-8	1.429911e-9
48	7969414	8050176	NM_004763	ITGB1BP1	-0.612105	3.985850e-12	6.906282e-8	1.438809e-9
49	7969414	8039605	NM_001005850	ZNF835	0.612024	4.019122e-12	6.963933e-8	1.421211e-9
50	7969414	8011220	hsa-mir-212		0.611913	4.064888e-12	7.043232e-8	1.408646e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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