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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
4903 8005407 NM_004140 LLGL1 link to infopage lethal giant larvae homolog 1 (Drosophila)

Fetching correlation data, please wait...
Getting list of correlations for id 4903.
Getting list of p-values for id 4903.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.150 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8005407 7994985 NM_014712 SETD1A link to infopage 0.681254 1.270618e-15 2.201600e-11 2.201600e-11
2 8005407 8052680 NM_004161 RAB1A link to infopage -0.675294 2.770873e-15 4.801092e-11 2.400546e-11
3 8005407 8113469 NM_014819 PJA2 link to infopage -0.673223 3.617797e-15 6.268557e-11 2.089519e-11
4 8005407 7965359 NM_001001323 ATP2B1 link to infopage -0.668395 6.680672e-15 1.157560e-10 2.893900e-11
5 8005407 8052024 NM_025133 FBXO11 link to infopage -0.661106 1.651069e-14 2.860807e-10 5.721614e-11
6 8005407 8138670 NM_031243 HNRNPA2B1 link to infopage -0.648800 7.195166e-14 1.246706e-9 2.077844e-10
7 8005407 7957186 NM_022771 TBC1D15 link to infopage -0.647188 8.682358e-14 1.504392e-9 2.149132e-10
8 8005407 8134880 NM_023948 MOSPD3 link to infopage 0.646334 9.586087e-14 1.660981e-9 2.076227e-10
9 8005407 7930454 NM_145341 PDCD4 link to infopage -0.645707 1.030724e-13 1.785936e-9 1.984373e-10
10 8005407 8174794 NM_001079872 CUL4B link to infopage -0.644782 1.146820e-13 1.987095e-9 1.987095e-10
11 8005407 7983663 NM_005154 USP8 link to infopage -0.644031 1.250309e-13 2.166411e-9 1.969465e-10
12 8005407 7920912 NM_020131 UBQLN4 link to infopage 0.640853 1.797138e-13 3.113901e-9 2.594917e-10
13 8005407 8107613 NM_003100 SNX2 link to infopage -0.639890 2.004249e-13 3.472762e-9 2.671355e-10
14 8005407 7945539 NM_024698 SLC25A22 link to infopage 0.637561 2.605419e-13 4.514409e-9 3.224578e-10
15 8005407 8017212 NM_032582 USP32 link to infopage -0.636686 2.873519e-13 4.978947e-9 3.319298e-10
16 8005407 8165462 NM_013366 ANAPC2 link to infopage 0.635175 3.400625e-13 5.892263e-9 3.682665e-10
17 8005407 8098916 NM_001127266 TMEM129 link to infopage 0.633534 4.079083e-13 7.067828e-9 4.157546e-10
18 8005407 8165171 NM_019892 INPP5E link to infopage 0.633377 4.150473e-13 7.191524e-9 3.995291e-10
19 8005407 7989323 NM_004330 BNIP2 link to infopage -0.633296 4.187776e-13 7.256159e-9 3.819031e-10
20 8005407 8004404 NM_178518 TMEM102 link to infopage 0.633088 4.285148e-13 7.424875e-9 3.712438e-10
21 8005407 8084219 NM_017644 KLHL24 link to infopage -0.632984 4.334338e-13 7.510108e-9 3.576242e-10
22 8005407 8031815 NM_173632 ZNF776 link to infopage -0.632562 4.540923e-13 7.868057e-9 3.576390e-10
23 8005407 7989037 NM_004748 CCPG1 link to infopage -0.632444 4.600142e-13 7.970665e-9 3.465507e-10
24 8005407 7922823 NM_025191 EDEM3 link to infopage -0.632141 4.756092e-13 8.240881e-9 3.433700e-10
25 8005407 8129590 NM_003569 STX7 link to infopage -0.630018 6.001429e-13 1.039868e-8 4.159470e-10
26 8005407 7906642 NM_152366 KLHDC9 link to infopage 0.627676 7.740729e-13 1.341236e-8 5.158601e-10
27 8005407 8043283 NM_018433 KDM3A link to infopage -0.625524 9.761351e-13 1.691349e-8 6.264256e-10
28 8005407 7903541 NM_007269 STXBP3 link to infopage -0.625081 1.023621e-12 1.773627e-8 6.334383e-10
29 8005407 7978570 NM_021249 SNX6 link to infopage -0.624524 1.086527e-12 1.882626e-8 6.491813e-10
30 8005407 7908437 NM_024529 CDC73 link to infopage -0.624318 1.110767e-12 1.924626e-8 6.415419e-10
31 8005407 7933947 NM_022079 HERC4 link to infopage -0.624178 1.127552e-12 1.953710e-8 6.302291e-10
32 8005407 8111698 NM_152756 RICTOR link to infopage -0.623948 1.155487e-12 2.002112e-8 6.256599e-10
33 8005407 7988970 NM_019600 KIAA1370 link to infopage -0.623436 1.220372e-12 2.114538e-8 6.407691e-10
34 8005407 7922646 NM_022347 TOR1AIP2 link to infopage -0.623376 1.228172e-12 2.128054e-8 6.258983e-10
35 8005407 8050190 NM_003183 ADAM17 link to infopage -0.623224 1.248216e-12 2.162783e-8 6.179381e-10
36 8005407 8092933 NM_012287 ACAP2 link to infopage -0.623158 1.257130e-12 2.178228e-8 6.050634e-10
37 8005407 7903703 NM_006496 GNAI3 link to infopage -0.622196 1.392361e-12 2.412544e-8 6.520389e-10
38 8005407 8162147 NM_024617 ZCCHC6 link to infopage -0.621482 1.501880e-12 2.602308e-8 6.848178e-10
39 8005407 8100714 NM_001031732 YTHDC1 link to infopage -0.621150 1.555467e-12 2.695158e-8 6.910661e-10
40 8005407 7917240 NM_004388 CTBS link to infopage -0.620913 1.594883e-12 2.763453e-8 6.908633e-10
41 8005407 8052010 NM_001743 CALM2 link to infopage -0.619791 1.795231e-12 3.110597e-8 7.586822e-10
42 8005407 8023672 NM_004869 VPS4B link to infopage -0.619420 1.866644e-12 3.234335e-8 7.700797e-10
43 8005407 7908978 NM_014827 ZC3H11A link to infopage -0.619329 1.884451e-12 3.265188e-8 7.593460e-10
44 8005407 7970655 NM_004685 MTMR6 link to infopage -0.618704 2.012287e-12 3.486690e-8 7.924295e-10
45 8005407 8008493 NM_016424 LUC7L3 link to infopage -0.618515 2.052466e-12 3.556309e-8 7.902908e-10
46 8005407 8119444 NM_001012426 FOXP4 link to infopage 0.616862 2.439144e-12 4.226305e-8 9.187619e-10
47 8005407 8152477 NM_006265 RAD21 link to infopage -0.616601 2.506216e-12 4.342520e-8 9.239405e-10
48 8005407 8095773 NM_003715 USO1 link to infopage -0.614013 3.276382e-12 5.676988e-8 1.182706e-9
49 8005407 8092201 NM_024665 TBL1XR1 link to infopage -0.613222 3.554416e-12 6.158737e-8 1.256885e-9
50 8005407 8160769 link to infopage 0.612892 3.677025e-12 6.371181e-8 1.274236e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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