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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id Label1 AccNum GeneSym Info Gene Name
451 8130142 NM_032832 LRP11 link to infopage low density lipoprotein receptor-related protein 11
3629 8122717 NM_032832 LRP11 link to infopage low density lipoprotein receptor-related protein 11

Fetching correlation data, please wait...
Getting list of correlations for id 451.
Getting list of p-values for id 451.
1 of 2 done.
Getting list of correlations for id 3629.
Getting list of p-values for id 3629.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.211 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8122717 8035506 NM_004750 CRLF1 link to infopage 0.770141 7.812792e-22 2.707445e-17 2.707445e-17
2 8122717 8049670 NM_002081 GPC1 link to infopage 0.750727 2.953723e-20 1.023583e-15 5.117916e-16
3 8122717 8065327 NM_033176 NKX2-4 link to infopage 0.750426 3.116326e-20 1.079932e-15 3.599772e-16
4 8122717 8019693 NM_148896 NPB link to infopage 0.750012 3.354850e-20 1.162590e-15 2.906475e-16
5 8122717 8010696 NM_148896 NPB link to infopage 0.750012 3.354850e-20 1.162590e-15 2.325180e-16
6 8122717 8107328 NR_027706 FLJ11235 link to infopage 0.748117 4.692623e-20 1.626182e-15 2.710303e-16
7 8122717 7992191 NM_012217 TPSD1 link to infopage 0.745956 6.856122e-20 2.375920e-15 3.394172e-16
8 8122717 8061303 NM_002196 INSM1 link to infopage 0.744295 9.150906e-20 3.171155e-15 3.963944e-16
9 8122717 8034605 NM_052850 GADD45GIP1 link to infopage 0.737220 3.054910e-19 1.058649e-14 1.176276e-15
10 8122717 8033385 NM_080662 PEX11G link to infopage 0.736766 3.295898e-19 1.142161e-14 1.142161e-15
11 8122717 7978093 NM_032452 JPH4 link to infopage 0.736665 3.352196e-19 1.161670e-14 1.056064e-15
12 8122717 8038584 NM_001080457 LRRC4B link to infopage 0.736561 3.411122e-19 1.182090e-14 9.850751e-16
13 8122717 7995324 link to infopage 0.734257 5.003912e-19 1.734056e-14 1.333889e-15
14 8122717 8076747 AK123383 LOC642648 link to infopage 0.734208 5.044308e-19 1.748054e-14 1.248610e-15
15 8122717 8039759 NM_198458 ZNF497 link to infopage 0.733911 5.298219e-19 1.836045e-14 1.224030e-15
16 8122717 7937228 NM_001012508 SPRN link to infopage 0.732498 6.686082e-19 2.316995e-14 1.448122e-15
17 8122717 7949843 NM_016366 CABP2 link to infopage 0.732363 6.835092e-19 2.368633e-14 1.393313e-15
18 8122717 8046276 NM_001003845 SP5 link to infopage 0.732103 7.133020e-19 2.471877e-14 1.373265e-15
19 8122717 8060094 NM_148961 OTOS link to infopage 0.731007 8.532191e-19 2.956745e-14 1.556182e-15
20 8122717 8024048 NM_002777 PRTN3 link to infopage 0.729856 1.028909e-18 3.565583e-14 1.782791e-15
21 8122717 8131296 NR_015343 LOC389458 link to infopage 0.729320 1.122090e-18 3.888492e-14 1.851663e-15
22 8122717 7992049 NM_207112 HAGHL link to infopage 0.728803 1.219946e-18 4.227599e-14 1.921636e-15
23 8122717 7992269 ENST00000301714 link to infopage 0.728630 1.254536e-18 4.347469e-14 1.890204e-15
24 8122717 7996448 NM_003946 NOL3 link to infopage 0.727639 1.471548e-18 5.099501e-14 2.124792e-15
25 8122717 8000903 NM_023931 ZNF747 link to infopage 0.727442 1.518696e-18 5.262888e-14 2.105155e-15
26 8122717 8049952 NM_173821 C2orf85 link to infopage 0.723040 3.056920e-18 1.059345e-13 4.074405e-15
27 8122717 8060334 NM_006943 SOX12 link to infopage 0.721602 3.830776e-18 1.327517e-13 4.916729e-15
28 8122717 7949015 NM_001144936 C11orf95 link to infopage 0.721163 4.102593e-18 1.421713e-13 5.077545e-15
29 8122717 8002072 BC008284 C16orf48 link to infopage 0.719700 5.151588e-18 1.785231e-13 6.155969e-15
30 8122717 8062427 NM_080607 VSTM2L link to infopage 0.719598 5.233583e-18 1.813646e-13 6.045486e-15
31 8122717 8028872 NM_001042544 LTBP4 link to infopage 0.717954 6.747852e-18 2.338401e-13 7.543228e-15
32 8122717 7912031 NM_019089 HES2 link to infopage 0.716998 7.815111e-18 2.708249e-13 8.463277e-15
33 8122717 7913547 NM_030761 WNT4 link to infopage 0.716965 7.854903e-18 2.722038e-13 8.248601e-15
34 8122717 8042532 NM_012476 VAX2 link to infopage 0.716701 8.178624e-18 2.834220e-13 8.335942e-15
35 8122717 8092888 NM_138399 TMEM44 link to infopage 0.716694 8.187174e-18 2.837183e-13 8.106238e-15
36 8122717 8038109 NM_017708 FAM83E link to infopage 0.716538 8.385709e-18 2.905983e-13 8.072176e-15
37 8122717 8032088 NM_214710 PRSSL1 link to infopage 0.714983 1.063033e-17 3.683835e-13 9.956310e-15
38 8122717 8143825 NM_000238 KCNH2 link to infopage 0.714228 1.192115e-17 4.131155e-13 1.087146e-14
39 8122717 8063796 NM_001794 CDH4 link to infopage 0.713589 1.313071e-17 4.550316e-13 1.166748e-14
40 8122717 7914180 NM_014752 SPCS2 link to infopage -0.713091 1.415650e-17 4.905793e-13 1.226448e-14
41 8122717 8159670 NM_006647 NOXA1 link to infopage 0.712996 1.436048e-17 4.976481e-13 1.213776e-14
42 8122717 8034940 NM_000435 NOTCH3 link to infopage 0.712891 1.458848e-17 5.055493e-13 1.203689e-14
43 8122717 7945445 BC039077 C11orf35 link to infopage 0.712173 1.625206e-17 5.631989e-13 1.309765e-14
44 8122717 7998668 NM_144603 NOXO1 link to infopage 0.711343 1.840666e-17 6.378643e-13 1.449692e-14
45 8122717 8036252 NM_015526 CLIP3 link to infopage 0.711136 1.898628e-17 6.579506e-13 1.462112e-14
46 8122717 7911435 NM_001014980 FAM132A link to infopage 0.711123 1.902190e-17 6.591850e-13 1.433011e-14
47 8122717 8137330 ENST00000356058 link to infopage 0.710342 2.137495e-17 7.407274e-13 1.576016e-14
48 8122717 8067867 ENST00000364942 link to infopage 0.710285 2.155733e-17 7.470477e-13 1.556349e-14
49 8122717 8133372 NM_000501 ELN link to infopage 0.709545 2.406553e-17 8.339668e-13 1.701973e-14
50 8122717 8051949 NM_016932 SIX2 link to infopage 0.709393 2.461447e-17 8.529899e-13 1.705980e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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