[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5240	8078544	NM_000249	MLH1		mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)

Fetching correlation data, please wait...
Getting list of correlations for id 5240.
Getting list of p-values for id 5240.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.137 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8078544	7929201	NM_003972	BTAF1	0.829009	9.468707e-28	1.640643e-23	1.640643e-23
2	8078544	8084971	NM_152699	SENP5	0.828895	9.769413e-28	1.692746e-23	8.463731e-24
3	8078544	7916443	NM_015306	USP24	0.819290	1.254838e-26	2.174258e-22	7.247527e-23
4	8078544	8057700	NM_016467	ORMDL1	0.818785	1.428806e-26	2.475692e-22	6.189230e-23
5	8078544	7913571	NM_001102398	HNRNPR	0.815212	3.544527e-26	6.141603e-22	1.228321e-22
6	8078544	7942626	NM_003369	UVRAG	0.815025	3.715819e-26	6.438400e-22	1.073067e-22
7	8078544	7924351	NM_004446	EPRS	0.812384	7.175580e-26	1.243313e-21	1.776161e-22
8	8078544	8156718	NM_002486	NCBP1	0.810868	1.042176e-25	1.805778e-21	2.257223e-22
9	8078544	7987325	NM_014691	AQR	0.810217	1.221974e-25	2.117315e-21	2.352572e-22
10	8078544	8121277	NM_001624	AIM1	0.807652	2.274938e-25	3.941785e-21	3.941785e-22
11	8078544	7917156	NM_003902	FUBP1	0.805871	3.483410e-25	6.035705e-21	5.487004e-22
12	8078544	7910520	NM_014236	GNPAT	0.805301	3.989138e-25	6.911980e-21	5.759983e-22
13	8078544	7903032	NM_007358	MTF2	0.804960	4.324346e-25	7.492795e-21	5.763688e-22
14	8078544	8095773	NM_003715	USO1	0.804440	4.889530e-25	8.472088e-21	6.051491e-22
15	8078544	8150928	NM_003580	NSMAF	0.804386	4.952829e-25	8.581768e-21	5.721178e-22
16	8078544	8113157	NM_014639	TTC37	0.804239	5.126906e-25	8.883390e-21	5.552119e-22
17	8078544	8046759	NM_018981	DNAJC10	0.804214	5.157598e-25	8.936570e-21	5.256806e-22
18	8078544	8104122	NM_033178	DUX4	-0.803840	5.633083e-25	9.760443e-21	5.422468e-22
19	8078544	8116664	NM_003913	PRPF4B	0.803747	5.756445e-25	9.974193e-21	5.249575e-22
20	8078544	8106784	NM_002890	RASA1	0.803640	5.903682e-25	1.022931e-20	5.114655e-22
21	8078544	7930956	NM_007190	SEC23IP	0.803160	6.607278e-25	1.144843e-20	5.451634e-22
22	8078544	8127787	NM_015525	IBTK	0.802816	7.161664e-25	1.240901e-20	5.640461e-22
23	8078544	7905099	NM_007259	VPS45	0.802814	7.164451e-25	1.241384e-20	5.397323e-22
24	8078544	7925978	NM_017782	C10orf18	0.802266	8.142937e-25	1.410927e-20	5.878861e-22
25	8078544	8057719	NM_014362	HIBCH	0.801717	9.252944e-25	1.603258e-20	6.413030e-22
26	8078544	7961767	AK295862	KIAA0528	0.801475	9.787216e-25	1.695831e-20	6.522426e-22
27	8078544	7926283	NM_003675	PRPF18	0.800985	1.096261e-24	1.899491e-20	7.035151e-22
28	8078544	7978449	NM_015382	HECTD1	0.800724	1.164471e-24	2.017679e-20	7.205998e-22
29	8078544	8103859	NM_001012732	DCTD	0.799370	1.590394e-24	2.755676e-20	9.502330e-22
30	8078544	8145636	NM_024567	HMBOX1	0.797788	2.282324e-24	3.954582e-20	1.318194e-21
31	8078544	8114861	NM_020117	LARS	0.796835	2.832079e-24	4.907144e-20	1.582950e-21
32	8078544	7972190	NM_022118	RBM26	0.796755	2.883674e-24	4.996543e-20	1.561420e-21
33	8078544	7989387	NM_020821	VPS13C	0.796288	3.204267e-24	5.552034e-20	1.682435e-21
34	8078544	8049682	hsa-mir-149		-0.796051	3.380053e-24	5.856618e-20	1.722535e-21
35	8078544	7958130	NM_003299	HSP90B1	0.795428	3.888207e-24	6.737097e-20	1.924885e-21
36	8078544	7903369	NM_133496	SLC30A7	0.795153	4.134928e-24	7.164589e-20	1.990164e-21
37	8078544	8006377	NM_001098507	ZNF207	0.794827	4.447582e-24	7.706326e-20	2.082791e-21
38	8078544	7930380	NM_016824	ADD3	0.794187	5.130434e-24	8.889503e-20	2.339343e-21
39	8078544	8174893	NM_001081550	THOC2	0.793107	6.521407e-24	1.129964e-19	2.897344e-21
40	8078544	8107474	NM_005509	DMXL1	0.792725	7.096424e-24	1.229597e-19	3.073994e-21
41	8078544	8051670	NM_005633	SOS1	0.792594	7.305716e-24	1.265861e-19	3.087467e-21
42	8078544	8098740	NM_033178	DUX4	-0.792495	7.467064e-24	1.293818e-19	3.080519e-21
43	8078544	7995583	NM_025134	CHD9	0.792142	8.070096e-24	1.398306e-19	3.251873e-21
44	8078544	8053046	NM_003584	DUSP11	0.792058	8.222028e-24	1.424631e-19	3.237797e-21
45	8078544	8078360	NM_178862	STT3B	0.791951	8.417844e-24	1.458560e-19	3.241244e-21
46	8078544	8108134	NM_014829	DDX46	0.791751	8.795835e-24	1.524054e-19	3.313162e-21
47	8078544	8173629	NM_004299	ABCB7	0.791544	9.204359e-24	1.594839e-19	3.393275e-21
48	8078544	7930422	NM_005445	SMC3	0.791388	9.524655e-24	1.650337e-19	3.438202e-21
49	8078544	7969935	NM_000123	ERCC5	0.791326	9.655480e-24	1.673005e-19	3.414296e-21
50	8078544	7988713	NM_017672	TRPM7	0.791230	9.860412e-24	1.708514e-19	3.417027e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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