[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5313	8024829	NM_032868	MPND		MPN domain containing

Fetching correlation data, please wait...
Getting list of correlations for id 5313.
Getting list of p-values for id 5313.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.133 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8024829	8024347	NM_079834	SCAMP4	0.649330	6.762465e-14	1.171732e-9	1.171732e-9
2	8024829	8156295	NM_024077	SECISBP2	-0.647685	8.194760e-14	1.419906e-9	7.099530e-10
3	8024829	7937813	NM_005706	TSSC4	0.633722	3.995101e-13	6.922311e-9	2.307437e-9
4	8024829	8090639	NM_014602	PIK3R4	-0.627813	7.626406e-13	1.321427e-8	3.303568e-9
5	8024829	8173613	NM_016120	RLIM	-0.615541	2.797776e-12	4.847706e-8	9.695413e-9
6	8024829	8112121	NM_173514	SLC38A9	-0.615446	2.825643e-12	4.895992e-8	8.159987e-9
7	8024829	8024356	NM_138422	ADAT3	0.613680	3.390693e-12	5.875055e-8	8.392935e-9
8	8024829	8083523	NM_003875	GMPS	-0.613321	3.518254e-12	6.096079e-8	7.620099e-9
9	8024829	7983663	NM_005154	USP8	-0.610569	4.662469e-12	8.078660e-8	8.976288e-9
10	8024829	8130859	NM_214462	DACT2	0.608631	5.675985e-12	9.834779e-8	9.834779e-9
11	8024829	8132843	NM_017645	HAUS6	-0.607662	6.259806e-12	1.084637e-7	9.860333e-9
12	8024829	7947609	NM_004813	PEX16	0.605956	7.430450e-12	1.287474e-7	1.072895e-8
13	8024829	8001748	NR_002980	SNORA50	-0.605949	7.435081e-12	1.288276e-7	9.909819e-9
14	8024829	7992271	NM_016111	TELO2	0.604879	8.275303e-12	1.433862e-7	1.024187e-8
15	8024829	8075865	NM_153609	TMPRSS6	0.603634	9.368047e-12	1.623201e-7	1.082134e-8
16	8024829	7949645	NM_207340	ZDHHC24	0.601694	1.135241e-11	1.967032e-7	1.229395e-8
17	8024829	8146906			0.601680	1.136811e-11	1.969752e-7	1.158678e-8
18	8024829	8148658	NM_014789	ZNF623	-0.601295	1.180892e-11	2.046131e-7	1.136740e-8
19	8024829	8131539	NM_018374	TMEM106B	-0.600744	1.246688e-11	2.160137e-7	1.136914e-8
20	8024829	8019316	NM_006907	PYCR1	0.597979	1.634377e-11	2.831885e-7	1.415942e-8
21	8024829	8016414	NM_003726	SKAP1	-0.594446	2.301425e-11	3.987678e-7	1.898894e-8
22	8024829	8086810	NM_003074	SMARCC1	-0.592913	2.666470e-11	4.620193e-7	2.100088e-8
23	8024829	7978428	NM_001083893	STRN3	-0.592194	2.856294e-11	4.949100e-7	2.151783e-8
24	8024829	8084219	NM_017644	KLHL24	-0.589828	3.577688e-11	6.199059e-7	2.582941e-8
25	8024829	8062695	NM_006275	SRSF6	-0.588311	4.129255e-11	7.154760e-7	2.861904e-8
26	8024829	8067602	NM_152864	NKAIN4	0.586925	4.703977e-11	8.150580e-7	3.134839e-8
27	8024829	7951497	NM_002519	NPAT	-0.586793	4.762638e-11	8.252223e-7	3.056379e-8
28	8024829	7945712	NM_199292	TH	0.586480	4.904450e-11	8.497940e-7	3.034979e-8
29	8024829	8025328	NM_001159944	EVI5L	0.585311	5.471210e-11	9.479966e-7	3.268954e-8
30	8024829	7948973	NM_054108	HRASLS5	0.585162	5.547612e-11	9.612347e-7	3.204116e-8
31	8024829	7941255	NM_145719	TIGD3	0.584884	5.693281e-11	9.864748e-7	3.182177e-8
32	8024829	7987675	NM_015540	RPAP1	0.584584	5.854763e-11	1.014455e-6	3.170171e-8
33	8024829	8002143	NM_000229	LCAT	0.584569	5.862780e-11	1.015844e-6	3.078315e-8
34	8024829	7984408	NM_145160	MAP2K5	-0.584530	5.883985e-11	1.019518e-6	2.998583e-8
35	8024829	7918474	NM_178454	DRAM2	-0.583827	6.281704e-11	1.088431e-6	3.109803e-8
36	8024829	7957715	NM_001135175	NEDD1	-0.583046	6.753326e-11	1.170149e-6	3.250413e-8
37	8024829	7947969	NM_015308	FNBP4	-0.582610	7.031320e-11	1.218317e-6	3.292748e-8
38	8024829	7990309	NM_022369	STRA6	0.581344	7.902510e-11	1.369268e-6	3.603337e-8
39	8024829	8032699	NM_015174	ZFR2	0.581036	8.129819e-11	1.408654e-6	3.611933e-8
40	8024829	8033025	NM_020175	DUS3L	0.580241	8.746069e-11	1.515431e-6	3.788579e-8
41	8024829	7915347	NM_133467	CITED4	0.576979	1.177718e-10	2.040633e-6	4.977153e-8
42	8024829	8042119	NM_022894	PAPOLG	-0.576040	1.282262e-10	2.221776e-6	5.289942e-8
43	8024829	8004372	NM_003985	TNK1	0.575141	1.390803e-10	2.409844e-6	5.604289e-8
44	8024829	8071981	NM_001145206	KIAA1671	0.575133	1.391758e-10	2.411498e-6	5.480678e-8
45	8024829	8045030	NM_001080527	MYO7B	0.574316	1.497996e-10	2.595577e-6	5.767949e-8
46	8024829	7934870	NM_032810	ATAD1	-0.574071	1.531351e-10	2.653371e-6	5.768199e-8
47	8024829	7964347	NM_001130963	TMEM194A	-0.573863	1.560253e-10	2.703450e-6	5.752022e-8
48	8024829	8176648	ENST00000430079		0.573836	1.563976e-10	2.709902e-6	5.645628e-8
49	8024829	8049919	NM_152783	D2HGDH	0.573714	1.581199e-10	2.739744e-6	5.591314e-8
50	8024829	8074316	NR_003267	GGT3P	0.572933	1.695833e-10	2.938370e-6	5.876740e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation