[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
10932	8118069	NM_001010909	MUC21		mucin 21, cell surface associated
11558	8177931	NM_001010909	MUC21		mucin 21, cell surface associated
12382	8179224	NM_001010909	MUC21		mucin 21, cell surface associated

Fetching correlation data, please wait...
Getting list of correlations for id 10932.
Getting list of p-values for id 10932.
1 of 3 done.
Getting list of correlations for id 11558.
Getting list of p-values for id 11558.
2 of 3 done.
Getting list of correlations for id 12382.
Getting list of p-values for id 12382.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.341 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8118069	8177931	NM_001010909	MUC21	0.985982	6.319759e-82	3.285074e-77	3.285074e-77
2	8177931	8118069	NM_001010909	MUC21	0.985982	6.319759e-82	3.285074e-77	1.642537e-77
3	8118069	8179224	NM_001010909	MUC21	0.964496	2.247271e-61	1.168154e-56	3.893846e-57
4	8179224	8118069	NM_001010909	MUC21	0.964496	2.247271e-61	1.168154e-56	2.920384e-57
5	8177931	8179224	NM_001010909	MUC21	0.945285	6.508646e-52	3.383260e-47	6.766519e-48
6	8179224	8177931	NM_001010909	MUC21	0.945285	6.508646e-52	3.383260e-47	5.638766e-48
7	8118069	7901696	NM_174936	PCSK9	0.777742	1.707674e-22	8.876658e-18	1.268094e-18
8	8118069	8026265	NM_080864	RLN3	0.776883	2.033576e-22	1.057073e-17	1.321341e-18
9	8177931	7901696	NM_174936	PCSK9	0.766075	1.720998e-21	8.945922e-17	9.939913e-18
10	8177931	8026265	NM_080864	RLN3	0.763982	2.568255e-21	1.335005e-16	1.335005e-17
11	8179224	7901696	NM_174936	PCSK9	0.759169	6.348814e-21	3.300177e-16	3.000161e-17
12	8179224	8026265	NM_080864	RLN3	0.748542	4.353915e-20	2.263209e-15	1.886007e-16
13	8179224	8018754	NM_134268	CYGB	0.738043	2.660275e-19	1.382838e-14	1.063721e-15
14	8179224	8098848	NM_213613	SLC26A1	0.735315	4.198503e-19	2.182424e-14	1.558874e-15
15	8118069	8098848	NM_213613	SLC26A1	0.732426	6.765685e-19	3.516870e-14	2.344580e-15
16	8118069	8049670	NM_002081	GPC1	0.731887	7.390027e-19	3.841410e-14	2.400881e-15
17	8179224	8005512	NM_002767	PRPSAP2	-0.731875	7.404601e-19	3.848986e-14	2.264109e-15
18	8118069	8018754	NM_134268	CYGB	0.730785	8.846471e-19	4.598484e-14	2.554713e-15
19	8179224	8038577	NM_001024656	ASPDH	0.730115	9.865589e-19	5.128232e-14	2.699069e-15
20	8118069	7945162	NM_003658	BARX2	0.729799	1.038425e-18	5.397838e-14	2.698919e-15
21	8118069	8004842	NM_173728	ARHGEF15	0.726265	1.833493e-18	9.530678e-14	4.538418e-15
22	8118069	8038577	NM_001024656	ASPDH	0.726021	1.906383e-18	9.909567e-14	4.504349e-15
23	8179224	7897737	NM_198545	C1orf187	0.725488	2.075060e-18	1.078637e-13	4.689725e-15
24	8118069	8159531	NM_207510	LCNL1	0.724271	2.517092e-18	1.308410e-13	5.451707e-15
25	8177931	8086908	NM_001130082	PLXNB1	0.722663	3.243478e-18	1.685992e-13	6.743968e-15
26	8177931	8049670	NM_002081	GPC1	0.720700	4.409940e-18	2.292331e-13	8.816656e-15
27	8177931	8018754	NM_134268	CYGB	0.720622	4.464136e-18	2.320503e-13	8.594454e-15
28	8118069	8060126	NM_198998	AQP12A	0.719991	4.924208e-18	2.559652e-13	9.141616e-15
29	8118069	8005512	NM_002767	PRPSAP2	-0.719672	5.173914e-18	2.689452e-13	9.273974e-15
30	8118069	7897737	NM_198545	C1orf187	0.719087	5.664802e-18	2.944621e-13	9.815402e-15
31	8118069	7949796	NM_206997	GPR152	0.718487	6.215507e-18	3.230883e-13	1.042220e-14
32	8177931	8060126	NM_198998	AQP12A	0.717786	6.923646e-18	3.598980e-13	1.124681e-14
33	8118069	8121209	NM_005604	POU3F2	0.717763	6.948719e-18	3.612014e-13	1.094550e-14
34	8179224	8049137	NM_001631	ALPI	0.717599	7.126307e-18	3.704326e-13	1.089508e-14
35	8118069	8086908	NM_001130082	PLXNB1	0.717403	7.343805e-18	3.817383e-13	1.090681e-14
36	8179224	8035801	ENST00000364165		0.717311	7.448925e-18	3.872026e-13	1.075563e-14
37	8179224	8108370	NM_001964	EGR1	0.717206	7.569582e-18	3.934744e-13	1.063444e-14
38	8177931	8004842	NM_173728	ARHGEF15	0.715727	9.491312e-18	4.933679e-13	1.298336e-14
39	8177931	7945162	NM_003658	BARX2	0.713279	1.375932e-17	7.152231e-13	1.833905e-14
40	8118069	7998601	NM_001146006	IGFALS	0.712022	1.662655e-17	8.642647e-13	2.160662e-14
41	8118069	7915385	NM_001956	EDN2	0.711530	1.789952e-17	9.304348e-13	2.269353e-14
42	8118069	8049137	NM_001631	ALPI	0.711190	1.883287e-17	9.789512e-13	2.330836e-14
43	8177931	8038393	hsa-mir-150		0.710591	2.059595e-17	1.070598e-12	2.489763e-14
44	8177931	8098848	NM_213613	SLC26A1	0.709809	2.314077e-17	1.202880e-12	2.733819e-14
45	8177931	8013042	NM_000422	KRT17	0.709791	2.320287e-17	1.206108e-12	2.680241e-14
46	8118069	8024373	NM_001039846	IZUMO4	0.709703	2.350662e-17	1.221898e-12	2.656299e-14
47	8118069	8151617	AF495523	REXO1L1	0.709489	2.426729e-17	1.261438e-12	2.683910e-14
48	8118069	8151605	AF495523	REXO1L1	0.709489	2.426729e-17	1.261438e-12	2.627995e-14
49	8118069	8151613	AF495523	REXO1L1	0.709489	2.426729e-17	1.261438e-12	2.574363e-14
50	8118069	8151621	AF495523	REXO1L1	0.709489	2.426729e-17	1.261438e-12	2.522876e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation