[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
602	8001876	NM_001018159	NAE1		NEDD8 activating enzyme E1 subunit 1

Fetching correlation data, please wait...
Getting list of correlations for id 602.
Getting list of p-values for id 602.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.138 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8001876	7903281	NM_012243	SLC35A3	0.791522	9.249005e-24	1.602575e-19	1.602575e-19
2	8001876	8173629	NM_004299	ABCB7	0.772661	4.749307e-22	8.229125e-18	4.114562e-18
3	8001876	7930422	NM_005445	SMC3	0.766888	1.471461e-21	2.549601e-17	8.498670e-18
4	8001876	8097373	BC034253	C4orf29	0.763827	2.644746e-21	4.582552e-17	1.145638e-17
5	8001876	7927972	NM_004896	VPS26A	0.763474	2.828390e-21	4.900752e-17	9.801504e-18
6	8001876	7957715	NM_001135175	NEDD1	0.758562	7.104928e-21	1.231071e-16	2.051785e-17
7	8001876	7971820	NM_016075	VPS36	0.756566	1.026709e-20	1.778979e-16	2.541399e-17
8	8001876	7988713	NM_017672	TRPM7	0.753517	1.789267e-20	3.100262e-16	3.875328e-17
9	8001876	8127787	NM_015525	IBTK	0.750578	3.033378e-20	5.255934e-16	5.839927e-17
10	8001876	7957186	NM_022771	TBC1D15	0.750114	3.294797e-20	5.708895e-16	5.708895e-17
11	8001876	7947221	NM_018362	LIN7C	0.749317	3.795774e-20	6.576937e-16	5.979033e-17
12	8001876	7903308	NM_019083	CCDC76	0.747230	5.485285e-20	9.504353e-16	7.920294e-17
13	8001876	7916969	NM_005455	ZRANB2	0.747047	5.663917e-20	9.813868e-16	7.549129e-17
14	8001876	7974387	NM_145251	STYX	0.746943	5.768207e-20	9.994572e-16	7.138980e-17
15	8001876	8173713	NM_032121	MAGT1	0.746283	6.474902e-20	1.121906e-15	7.479375e-17
16	8001876	7974146	NM_017922	PRPF39	0.744751	8.454786e-20	1.464961e-15	9.156005e-17
17	8001876	8105353	NM_015360	SKIV2L2	0.743443	1.060189e-19	1.836989e-15	1.080582e-16
18	8001876	7980940	NM_004993	ATXN3	0.742845	1.175218e-19	2.036300e-15	1.131278e-16
19	8001876	8051622	NM_001031684	SRSF7	0.741754	1.417237e-19	2.455647e-15	1.292446e-16
20	8001876	7957737	NM_001032283	TMPO	0.741630	1.447689e-19	2.508411e-15	1.254205e-16
21	8001876	8020068	NM_015208	ANKRD12	0.740716	1.691912e-19	2.931575e-15	1.395988e-16
22	8001876	7978739	NM_001079537	TRAPPC6B	0.740649	1.711459e-19	2.965446e-15	1.347930e-16
23	8001876	8097480	NM_057175	NAA15	0.740406	1.783699e-19	3.090615e-15	1.343745e-16
24	8001876	7917156	NM_003902	FUBP1	0.739450	2.097909e-19	3.635047e-15	1.514603e-16
25	8001876	8107613	NM_003100	SNX2	0.739442	2.100848e-19	3.640139e-15	1.456056e-16
26	8001876	8046975	NM_032168	WDR75	0.738543	2.445703e-19	4.237670e-15	1.629873e-16
27	8001876	8017235	NM_006380	APPBP2	0.738391	2.509195e-19	4.347682e-15	1.610253e-16
28	8001876	8155770	NM_015110	SMC5	0.736905	3.220190e-19	5.579622e-15	1.992722e-16
29	8001876	8044766	NM_016133	INSIG2	0.736212	3.616114e-19	6.265641e-15	2.160566e-16
30	8001876	8095773	NM_003715	USO1	0.736134	3.663505e-19	6.347755e-15	2.115918e-16
31	8001876	7902382	NM_004582	RABGGTB	0.735675	3.954649e-19	6.852220e-15	2.210394e-16
32	8001876	8140942	NM_001040057	FAM133B	0.735370	4.160555e-19	7.208993e-15	2.252810e-16
33	8001876	7970546	NM_152726	EFHA1	0.735294	4.213415e-19	7.300584e-15	2.212298e-16
34	8001876	8105633	NM_015342	PPWD1	0.735148	4.316263e-19	7.478788e-15	2.199644e-16
35	8001876	8047518	NM_015934	NOP58	0.734757	4.606227e-19	7.981209e-15	2.280346e-16
36	8001876	7904340	NM_006699	MAN1A2	0.734694	4.654019e-19	8.064020e-15	2.240005e-16
37	8001876	7916562	NM_002136	HNRNPA1	0.734042	5.184838e-19	8.983769e-15	2.428046e-16
38	8001876	8068062	NM_006447	USP16	0.732968	6.188950e-19	1.072359e-14	2.821999e-16
39	8001876	7975224	NM_004094	EIF2S1	0.732830	6.330969e-19	1.096967e-14	2.812736e-16
40	8001876	7930627	NM_000684	ADRB1	-0.731555	7.802237e-19	1.351894e-14	3.379734e-16
41	8001876	7902367	NM_000016	ACADM	0.731483	7.893870e-19	1.367771e-14	3.336026e-16
42	8001876	7907124	NM_152902	TIPRL	0.731436	7.955595e-19	1.378466e-14	3.282062e-16
43	8001876	8091637	NM_004733	SLC33A1	0.730804	8.818984e-19	1.528065e-14	3.553640e-16
44	8001876	7937915	NM_001033	RRM1	0.730073	9.931783e-19	1.720880e-14	3.911091e-16
45	8001876	8114193	NM_001033503	SAR1B	0.729911	1.019707e-18	1.766847e-14	3.926326e-16
46	8001876	7968761	NM_024561	NAA16	0.729199	1.144432e-18	1.982957e-14	4.310775e-16
47	8001876	7913712	NM_006625	SRSF10	0.728883	1.204347e-18	2.086773e-14	4.439942e-16
48	8001876	7956910	NM_018448	CAND1	0.728827	1.215226e-18	2.105623e-14	4.386714e-16
49	8001876	7903032	NM_007358	MTF2	0.726691	1.712977e-18	2.968075e-14	6.057296e-16
50	8001876	8078360	NM_178862	STT3B	0.725552	2.054283e-18	3.559456e-14	7.118911e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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