[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
16865	8112521	NM_004536	NAIP		NLR family, apoptosis inhibitory protein
17010	8112478	NM_004536	NAIP		NLR family, apoptosis inhibitory protein

Fetching correlation data, please wait...
Getting list of correlations for id 16865.
Getting list of p-values for id 16865.
1 of 2 done.
Getting list of correlations for id 17010.
Getting list of p-values for id 17010.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.314 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8112521	8177527			1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8112478	8112521	NM_004536	NAIP	0.998010	1.868412e-125	6.474796e-121	3.237398e-121
3	8112478	8177527			0.998010	1.868412e-125	6.474796e-121	2.158265e-121
4	8112521	8112478	NM_004536	NAIP	0.998010	1.868412e-125	6.474796e-121	1.618699e-121
5	8112478	7956878	NM_007199	IRAK3	0.749847	3.455137e-20	1.197343e-15	2.394687e-16
6	8112521	7956878	NM_007199	IRAK3	0.745374	7.587760e-20	2.629462e-15	4.382437e-16
7	8112478	8065280	NM_020343	RALGAPA2	0.727031	1.622048e-18	5.621045e-14	8.030064e-15
8	8112521	8065280	NM_020343	RALGAPA2	0.720881	4.287074e-18	1.485643e-13	1.857053e-14
9	8112478	7969651	NM_006260	DNAJC3	0.715581	9.704616e-18	3.363038e-13	3.736709e-14
10	8112478	7978932	NM_006939	SOS2	0.713870	1.258424e-17	4.360942e-13	4.360942e-14
11	8112478	8105506	NM_020928	ZSWIM6	0.711788	1.721943e-17	5.967220e-13	5.424746e-14
12	8112478	8162086	NM_015239	AGTPBP1	0.711515	1.793920e-17	6.216650e-13	5.180542e-14
13	8112478	8040552	NM_147223	NCOA1	0.709579	2.394649e-17	8.298418e-13	6.383399e-14
14	8112521	7969651	NM_006260	DNAJC3	0.709194	2.535267e-17	8.785714e-13	6.275510e-14
15	8112478	8096669	NM_017628	TET2	0.709093	2.573679e-17	8.918829e-13	5.945886e-14
16	8112478	8173766	NM_153252	BRWD3	0.708657	2.745241e-17	9.513358e-13	5.945849e-14
17	8112521	8105506	NM_020928	ZSWIM6	0.707154	3.426863e-17	1.187545e-12	6.985559e-14
18	8112521	8050427	NM_030797	FAM49A	0.706624	3.704223e-17	1.283662e-12	7.131453e-14
19	8112521	8040552	NM_147223	NCOA1	0.706554	3.742469e-17	1.296915e-12	6.825869e-14
20	8112478	8152863	ENST00000363205		0.705741	4.215570e-17	1.460863e-12	7.304317e-14
21	8112478	8050427	NM_030797	FAM49A	0.705358	4.457966e-17	1.544863e-12	7.356493e-14
22	8112478	8056060	NM_013450	BAZ2B	0.702998	6.280561e-17	2.176466e-12	9.893026e-14
23	8112521	8096669	NM_017628	TET2	0.701993	7.260519e-17	2.516060e-12	1.093939e-13
24	8112478	8084541	NM_001009921	VPS8	0.701819	7.444360e-17	2.579769e-12	1.074904e-13
25	8112478	8082688	NM_015268	DNAJC13	0.701786	7.480151e-17	2.592171e-12	1.036869e-13
26	8112521	7978932	NM_006939	SOS2	0.701670	7.606240e-17	2.635867e-12	1.013795e-13
27	8112478	7946516	NM_030962	SBF2	0.700100	9.524406e-17	3.300588e-12	1.222440e-13
28	8112478	8133788	NM_002835	PTPN12	0.700028	9.622254e-17	3.334496e-12	1.190891e-13
29	8112521	8162086	NM_015239	AGTPBP1	0.699351	1.059709e-16	3.672317e-12	1.266316e-13
30	8112521	8173766	NM_153252	BRWD3	0.698226	1.243440e-16	4.309016e-12	1.436339e-13
31	8112478	8102006	NM_005908	MANBA	0.698071	1.271076e-16	4.404788e-12	1.420899e-13
32	8112478	8157858	NM_015635	GAPVD1	0.696528	1.580245e-16	5.476182e-12	1.711307e-13
33	8112521	8051396	NM_021209	NLRC4	0.696404	1.608024e-16	5.572445e-12	1.688620e-13
34	8112521	8102006	NM_005908	MANBA	0.695626	1.793877e-16	6.216500e-12	1.828382e-13
35	8112478	8109843	NM_004946	DOCK2	0.695569	1.808118e-16	6.265851e-12	1.790243e-13
36	8112521	8082688	NM_015268	DNAJC13	0.695513	1.822407e-16	6.315369e-12	1.754269e-13
37	8112521	8152863	ENST00000363205		0.695361	1.861645e-16	6.451344e-12	1.743606e-13
38	8112478	8166826	NM_001039590	USP9X	0.695188	1.907208e-16	6.609239e-12	1.739273e-13
39	8112521	8056060	NM_013450	BAZ2B	0.695089	1.933974e-16	6.701992e-12	1.718459e-13
40	8112521	8084541	NM_001009921	VPS8	0.695051	1.944233e-16	6.737544e-12	1.684386e-13
41	8112521	8133788	NM_002835	PTPN12	0.694199	2.189749e-16	7.588358e-12	1.850819e-13
42	8112521	8157858	NM_015635	GAPVD1	0.694181	2.195261e-16	7.607456e-12	1.811299e-13
43	8112478	8099410	NM_148894	BOD1L	0.693150	2.534043e-16	8.781472e-12	2.042203e-13
44	8112521	8109843	NM_004946	DOCK2	0.692953	2.603924e-16	9.023638e-12	2.050827e-13
45	8112478	8093961	NM_014743	KIAA0232	0.692269	2.862816e-16	9.920804e-12	2.204623e-13
46	8112521	7946516	NM_030962	SBF2	0.691996	2.972794e-16	1.030192e-11	2.239548e-13
47	8112478	7916077	NM_002525	NRD1	0.691388	3.233097e-16	1.120397e-11	2.383824e-13
48	8112478	7927095	BC032332	PCMTD2	0.690920	3.448329e-16	1.194984e-11	2.489550e-13
49	8112478	7930882	NM_207009	FAM45A	0.688662	4.697659e-16	1.627927e-11	3.322299e-13
50	8112478	8051396	NM_021209	NLRC4	0.687641	5.397510e-16	1.870453e-11	3.740907e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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