[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2448	7986675	NM_144599	NIPA1		non imprinted in Prader-Willi/Angelman syndrome 1

Fetching correlation data, please wait...
Getting list of correlations for id 2448.
Getting list of p-values for id 2448.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.120 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7986675	7958158	NM_013320	HCFC2	0.557289	6.634908e-10	1.149631e-5	1.149631e-5
2	7986675	7904287	NM_001767	CD2	0.550316	1.191672e-9	2.064810e-5	1.032405e-5
3	7986675	8042413	NM_138964	PROKR1	-0.532518	5.006366e-9	8.674530e-5	2.891510e-5
4	7986675	8168531	NM_032553	GPR174	0.530036	6.076046e-9	1.052797e-4	2.631991e-5
5	7986675	8039961	NR_024080	ACP1	0.526106	8.229378e-9	1.425904e-4	2.851809e-5
6	7986675	8081853	NR_024265	KTELC1	0.523795	9.819080e-9	1.701352e-4	2.835587e-5
7	7986675	8025877	NM_022737	LPPR2	-0.523406	1.011406e-8	1.752464e-4	2.503520e-5
8	7986675	8091103	NM_006286	TFDP2	0.521602	1.159656e-8	2.009335e-4	2.511669e-5
9	7986675	7904830	NM_014455	RNF115	0.520430	1.266908e-8	2.195172e-4	2.439080e-5
10	7986675	8059854	NM_005737	ARL4C	0.519716	1.336781e-8	2.316241e-4	2.316241e-5
11	7986675	8044849	NM_002830	PTPN4	0.518625	1.450784e-8	2.513773e-4	2.285248e-5
12	7986675	8057771	NM_003151	STAT4	0.518469	1.467819e-8	2.543291e-4	2.119409e-5
13	7986675	7939329	NM_003477	PDHX	0.516616	1.685470e-8	2.920414e-4	2.246472e-5
14	7986675	8112570	NM_015084	MRPS27	0.513622	2.103819e-8	3.645287e-4	2.603776e-5
15	7986675	7951614	NM_002716	PPP2R1B	0.508484	3.062348e-8	5.306130e-4	3.537420e-5
16	7986675	7916928	NM_030816	ANKRD13C	0.504931	3.956249e-8	6.854993e-4	4.284371e-5
17	7986675	8105181	NM_016640	MRPS30	0.503155	4.491490e-8	7.782406e-4	4.577886e-5
18	7986675	7966448	NM_138341	TMEM116	0.502367	4.750395e-8	8.231010e-4	4.572783e-5
19	7986675	7914563	NM_003680	YARS	0.501893	4.913081e-8	8.512896e-4	4.480471e-5
20	7986675	7950016	NM_153451	ORAOV1	0.499727	5.726113e-8	9.921637e-4	4.960818e-5
21	7986675	7967149	NM_016237	ANAPC5	0.498994	6.029486e-8	1.044729e-3	4.974900e-5
22	7986675	7958253	NM_001145199	C12orf75	0.497930	6.497075e-8	1.125748e-3	5.117037e-5
23	7986675	7960131	ENST00000425052		0.496906	6.979400e-8	1.209321e-3	5.257916e-5
24	7986675	8115234	NM_001155	ANXA6	0.494290	8.372157e-8	1.450644e-3	6.044348e-5
25	7986675	8030368	NM_001015	RPS11	0.493124	9.074767e-8	1.572385e-3	6.289540e-5
26	7986675	8004691	NM_203411	TMEM88	-0.492145	9.707961e-8	1.682098e-3	6.469609e-5
27	7986675	8043251	NM_017952	PTCD3	0.491582	1.009097e-7	1.748462e-3	6.475784e-5
28	7986675	7906852	NM_175866	UHMK1	0.490969	1.052416e-7	1.823521e-3	6.512574e-5
29	7986675	8088247	NM_001128615	ARHGEF3	0.490380	1.095747e-7	1.898601e-3	6.546899e-5
30	7986675	7996947	NM_030579	CYB5B	0.490185	1.110457e-7	1.924089e-3	6.413629e-5
31	7986675	8090715	NM_032169	ACAD11	0.489869	1.134683e-7	1.966066e-3	6.342149e-5
32	7986675	8145922	NM_015214	DDHD2	0.489013	1.202922e-7	2.084302e-3	6.513445e-5
33	7986675	7915995	NM_007051	FAF1	0.485343	1.542225e-7	2.672214e-3	8.097618e-5
34	7986675	8037032	NM_198540	B3GNT8	-0.485224	1.554595e-7	2.693647e-3	7.922491e-5
35	7986675	8020806	NM_017831	RNF125	0.485074	1.570319e-7	2.720892e-3	7.773978e-5
36	7986675	7908777	ENST00000412093		0.484784	1.601277e-7	2.774532e-3	7.707034e-5
37	7986675	8160151	NM_178566	ZDHHC21	0.483368	1.760659e-7	3.050694e-3	8.245118e-5
38	7986675	7957737	NM_001032283	TMPO	0.482569	1.857241e-7	3.218042e-3	8.468531e-5
39	7986675	8092627	NM_018138	TBCCD1	0.482424	1.875239e-7	3.249226e-3	8.331350e-5
40	7986675	8129410	NM_001010923	THEMIS	0.481393	2.008543e-7	3.480203e-3	8.700507e-5
41	7986675	8065566	NM_001037500	DEFB124	-0.481370	2.011580e-7	3.485464e-3	8.501131e-5
42	7986675	8117194	NM_020662	MRS2	0.480085	2.190527e-7	3.795526e-3	9.036967e-5
43	7986675	8019090	NM_001080395	AATK	-0.478220	2.477526e-7	4.292809e-3	9.983278e-5
44	7986675	8072946	NM_016091	EIF3L	0.477102	2.666314e-7	4.619921e-3	1.049982e-4
45	7986675	8128322	NM_014165	NDUFAF4	0.476620	2.751787e-7	4.768021e-3	1.059560e-4
46	7986675	8014891	NM_012481	IKZF3	0.476319	2.806463e-7	4.862759e-3	1.057122e-4
47	7986675	7906386	NM_152501	PYHIN1	0.475861	2.891777e-7	5.010582e-3	1.066081e-4
48	7986675	7927981	NM_003171	SUPV3L1	0.475466	2.967436e-7	5.141676e-3	1.071182e-4
49	7986675	7996934	NM_016101	NIP7	0.475349	2.990099e-7	5.180944e-3	1.057336e-4
50	7986675	7920217	NM_001014291	SPRR2G	-0.474650	3.129287e-7	5.422116e-3	1.084423e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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