[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3877	8019231	NM_002602	PDE6G		phosphodiesterase 6G, cGMP-specific, rod, gamma

Fetching correlation data, please wait...
Getting list of correlations for id 3877.
Getting list of p-values for id 3877.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.157 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8019231	8114550	NM_004883	NRG2	0.763222	2.967024e-21	5.140962e-17	5.140962e-17
2	8019231	7949857	NM_181843	NUDT8	0.750801	2.915160e-20	5.051097e-16	2.525548e-16
3	8019231	7959234	NM_000545	HNF1A	0.749546	3.644716e-20	6.315200e-16	2.105067e-16
4	8019231	8112072	NM_021147	CCNO	0.748352	4.502394e-20	7.801298e-16	1.950324e-16
5	8019231	8064242	NR_027686	NCRNA00176	0.748228	4.601923e-20	7.973752e-16	1.594750e-16
6	8019231	8028407	NM_000540	RYR1	0.746438	6.302153e-20	1.091974e-15	1.819957e-16
7	8019231	7935983	NM_005029	PITX3	0.745695	7.175362e-20	1.243275e-15	1.776107e-16
8	8019231	8153346	NM_023946	LYNX1	0.744785	8.405979e-20	1.456504e-15	1.820630e-16
9	8019231	8014269	NM_139285	GAS2L2	0.742206	1.311542e-19	2.272509e-15	2.525010e-16
10	8019231	7936882	NM_001146340	NKX1-2	0.740872	1.647620e-19	2.854831e-15	2.854831e-16
11	8019231	7998444	ENST00000440800		0.740551	1.740284e-19	3.015390e-15	2.741264e-16
12	8019231	7990244	NM_005477	HCN4	0.738925	2.292879e-19	3.972871e-15	3.310726e-16
13	8019231	7906307	NM_018240	KIRREL	0.736204	3.620421e-19	6.273104e-15	4.825465e-16
14	8019231	8110382	NM_030567	PRR7	0.735771	3.891664e-19	6.743086e-15	4.816490e-16
15	8019231	8159624	BC052297	C9orf169	0.735278	4.224157e-19	7.319197e-15	4.879465e-16
16	8019231	8027556	NM_002333	LRP3	0.733150	6.005965e-19	1.040654e-14	6.504085e-16
17	8019231	7913450	NM_005529	HSPG2	0.732015	7.236175e-19	1.253812e-14	7.375365e-16
18	8019231	7953150	NM_003213	TEAD4	0.731515	7.853166e-19	1.360718e-14	7.559545e-16
19	8019231	7912031	NM_019089	HES2	0.731382	8.025278e-19	1.390540e-14	7.318631e-16
20	8019231	7992518	NM_014353	RAB26	0.730877	8.715583e-19	1.510149e-14	7.550745e-16
21	8019231	8111216	ENST00000426411		0.729603	1.071920e-18	1.857316e-14	8.844363e-16
22	8019231	8008228	NM_138281	DLX4	0.728453	1.290820e-18	2.236604e-14	1.016638e-15
23	8019231	7911435	NM_001014980	FAM132A	0.728109	1.364312e-18	2.363944e-14	1.027802e-15
24	8019231	7973745	NM_005249	FOXG1	0.727134	1.595565e-18	2.764635e-14	1.151931e-15
25	8019231	7972899	BX647655	DKFZp451A211	0.726143	1.869445e-18	3.239187e-14	1.295675e-15
26	8019231	8131056	NM_017781	CYP2W1	0.725064	2.219975e-18	3.846550e-14	1.479442e-15
27	8019231	7959402	NM_030765	B3GNT4	0.724874	2.287755e-18	3.963992e-14	1.468145e-15
28	8019231	8033487	NM_032447	FBN3	0.724854	2.294969e-18	3.976492e-14	1.420176e-15
29	8019231	7941457	NM_006848	CCDC85B	0.724823	2.306469e-18	3.996418e-14	1.378075e-15
30	8019231	8030582	NM_001145809	MYH14	0.724431	2.454155e-18	4.252315e-14	1.417438e-15
31	8019231	7952227	NM_015645	C1QTNF5	0.721860	3.679239e-18	6.375017e-14	2.056457e-15
32	8019231	8172197	NR_002191	PPP1R2P9	0.721680	3.784400e-18	6.557230e-14	2.049134e-15
33	8019231	7911683	NM_182533	C1orf86	0.720659	4.438429e-18	7.690467e-14	2.330444e-15
34	8019231	8038587	NM_032298	SYT3	0.719649	5.192297e-18	8.996693e-14	2.646086e-15
35	8019231	8049536	NM_001137550	LRRFIP1	0.716897	7.937127e-18	1.375266e-13	3.929332e-15
36	8019231	8165639	BC052297	C9orf169	0.715632	9.630419e-18	1.668663e-13	4.635174e-15
37	8019231	8153838	NM_004260	RECQL4	0.714885	1.078920e-17	1.869445e-13	5.052554e-15
38	8019231	8115691	NM_003062	SLIT3	0.714839	1.086538e-17	1.882644e-13	4.954327e-15
39	8019231	7932308	NM_001010908	C1QL3	0.714701	1.109515e-17	1.922456e-13	4.929375e-15
40	8019231	7964388	NM_020142	NDUFA4L2	0.714484	1.146711e-17	1.986907e-13	4.967267e-15
41	8019231	8013606	NM_000638	VTN	0.714237	1.190407e-17	2.062619e-13	5.030778e-15
42	8019231	8131087	NM_001080461	UNCX	0.713139	1.405276e-17	2.434922e-13	5.797434e-15
43	8019231	8010071	NM_001088	AANAT	0.712876	1.462164e-17	2.533491e-13	5.891841e-15
44	8019231	7966389	NM_144671	FAM109A	0.712129	1.636011e-17	2.834715e-13	6.442535e-15
45	8019231	8029950	NM_014601	EHD2	0.711735	1.735622e-17	3.007313e-13	6.682918e-15
46	8019231	7923360	NM_003281	TNNI1	0.710744	2.013191e-17	3.488255e-13	7.583163e-15
47	8019231	8159211	NM_004108	FCN2	0.710609	2.054180e-17	3.559278e-13	7.572932e-15
48	8019231	8004842	NM_173728	ARHGEF15	0.709752	2.333602e-17	4.043432e-13	8.423817e-15
49	8019231	7998878	NM_022119	PRSS22	0.708473	2.820843e-17	4.887674e-13	9.974845e-15
50	8019231	8151609	NM_172239	REXO1L1	0.708235	2.922021e-17	5.062987e-13	1.012597e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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