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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id Label1 AccNum GeneSym Info Gene Name
1705 8155665 NM_021965 PGM5 link to infopage phosphoglucomutase 5
11178 8044640 NM_021965 PGM5 link to infopage phosphoglucomutase 5

Fetching correlation data, please wait...
Getting list of correlations for id 1705.
Getting list of p-values for id 1705.
1 of 2 done.
Getting list of correlations for id 11178.
Getting list of p-values for id 11178.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.215 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8044640 8062948 NM_014276 RBPJL link to infopage 0.739714 2.006038e-19 6.951724e-15 6.951724e-15
2 8044640 7994961 NM_001330 CTF1 link to infopage 0.739623 2.037444e-19 7.060558e-15 3.530279e-15
3 8044640 8098740 NM_033178 DUX4 link to infopage 0.738130 2.621746e-19 9.085397e-15 3.028466e-15
4 8044640 8065344 NM_021784 FOXA2 link to infopage 0.733313 5.847360e-19 2.026344e-14 5.065860e-15
5 8044640 8104122 NM_033178 DUX4 link to infopage 0.731584 7.765467e-19 2.691045e-14 5.382090e-15
6 8044640 8025621 NM_003259 ICAM5 link to infopage 0.730918 8.656388e-19 2.999785e-14 4.999641e-15
7 8044640 8098732 NM_033178 DUX4 link to infopage 0.725695 2.007909e-18 6.958208e-14 9.940297e-15
8 8044640 8120880 NM_006670 TPBG link to infopage 0.720015 4.905975e-18 1.700116e-13 2.125146e-14
9 8044640 7997264 NM_001906 CTRB1 link to infopage 0.712783 1.482898e-17 5.138834e-13 5.709816e-14
10 8044640 8006562 NM_033315 RASL10B link to infopage 0.712588 1.526996e-17 5.291651e-13 5.291651e-14
11 8044640 7914361 NM_001856 COL16A1 link to infopage 0.712588 1.527024e-17 5.291751e-13 4.810682e-14
12 8044640 8054154 NM_207362 C2orf55 link to infopage 0.707094 3.456859e-17 1.197940e-12 9.982832e-14
13 8044640 7911750 NM_001010926 HES5 link to infopage 0.706366 3.846855e-17 1.333089e-12 1.025453e-13
14 8044640 8153322 NM_015193 ARC link to infopage 0.701827 7.436415e-17 2.577015e-12 1.840725e-13
15 8044640 8159354 NM_016215 EGFL7 link to infopage 0.701098 8.256249e-17 2.861121e-12 1.907414e-13
16 8044640 7972291 NM_007084 SOX21 link to infopage 0.700553 8.927375e-17 3.093693e-12 1.933558e-13
17 8044640 7930482 NM_000681 ADRA2A link to infopage 0.700383 9.146083e-17 3.169484e-12 1.864402e-13
18 8044640 8002344 NM_058219 EXOSC6 link to infopage 0.700110 9.510055e-17 3.295615e-12 1.830897e-13
19 8044640 7992191 NM_012217 TPSD1 link to infopage 0.696712 1.539975e-16 5.336628e-12 2.808751e-13
20 8044640 7992181 NM_003294 TPSAB1 link to infopage 0.694734 2.032173e-16 7.042292e-12 3.521146e-13
21 8044640 8040479 NM_182828 GDF7 link to infopage 0.693404 2.445893e-16 8.475997e-12 4.036189e-13
22 8044640 7998434 NM_003294 TPSAB1 link to infopage 0.692182 2.897473e-16 1.004090e-11 4.564046e-13
23 8044640 8127128 NM_033480 FBXO9 link to infopage 0.691275 3.283984e-16 1.138032e-11 4.947965e-13
24 8044640 8020141 NM_153000 APCDD1 link to infopage 0.689901 3.966119e-16 1.374419e-11 5.726745e-13
25 8044640 7907310 NM_015172 BAT2L2 link to infopage -0.689712 4.070099e-16 1.410452e-11 5.641808e-13
26 8044640 8065327 NM_033176 NKX2-4 link to infopage 0.689482 4.200180e-16 1.455530e-11 5.598193e-13
27 8044640 8033385 NM_080662 PEX11G link to infopage 0.689094 4.428851e-16 1.534774e-11 5.684348e-13
28 8044640 7945536 NM_016564 CEND1 link to infopage 0.688859 4.573186e-16 1.584792e-11 5.659972e-13
29 8044640 8028600 NM_001001414 NCCRP1 link to infopage 0.688270 4.955298e-16 1.717209e-11 5.921410e-13
30 8044640 8075118 NM_001887 CRYBB1 link to infopage 0.688167 5.025406e-16 1.741504e-11 5.805013e-13
31 8044640 7937363 NM_007183 PKP3 link to infopage 0.687881 5.224819e-16 1.810609e-11 5.840673e-13
32 8044640 8093425 NM_000203 IDUA link to infopage 0.687665 5.380450e-16 1.864541e-11 5.826691e-13
33 8044640 8064059 NM_020882 COL20A1 link to infopage 0.687650 5.391153e-16 1.868250e-11 5.661364e-13
34 8044640 8045332 ENST00000458407 link to infopage 0.687436 5.549761e-16 1.923214e-11 5.656513e-13
35 8044640 8046276 NM_001003845 SP5 link to infopage 0.687048 5.849510e-16 2.027089e-11 5.791684e-13
36 8044640 7992197 ENST00000429194 link to infopage 0.686921 5.950935e-16 2.062237e-11 5.728436e-13
37 8044640 8145636 NM_024567 HMBOX1 link to infopage -0.686880 5.984543e-16 2.073883e-11 5.605090e-13
38 8044640 8107530 ENST00000365222 link to infopage 0.686113 6.637889e-16 2.300294e-11 6.053406e-13
39 8044640 7936590 NM_004248 PRLHR link to infopage 0.686064 6.681968e-16 2.315569e-11 5.937357e-13
40 8044640 7992460 NM_001099456 NPW link to infopage 0.685511 7.198490e-16 2.494565e-11 6.236412e-13
41 8044640 8157534 NM_007018 CEP110 link to infopage -0.685296 7.410553e-16 2.568053e-11 6.263544e-13
42 8044640 8032034 NM_001136263 C2CD4C link to infopage 0.684663 8.068060e-16 2.795906e-11 6.656918e-13
43 8044640 8036676 NM_024907 FBXO17 link to infopage 0.683970 8.852162e-16 3.067628e-11 7.134019e-13
44 8044640 8039520 NM_001101401 SBK2 link to infopage 0.683767 9.096154e-16 3.152181e-11 7.164048e-13
45 8044640 8049942 NM_080741 NEU4 link to infopage 0.683646 9.245052e-16 3.203780e-11 7.119512e-13
46 8155665 8161513 NR_002836 PGM5P2 link to infopage 0.680805 1.348455e-15 4.672937e-11 1.015856e-12
47 8044640 8034940 NM_000435 NOTCH3 link to infopage 0.680551 1.394400e-15 4.832153e-11 1.028118e-12
48 8044640 8027222 NM_153221 CILP2 link to infopage 0.680427 1.417334e-15 4.911629e-11 1.023256e-12
49 8044640 7915435 NM_001123395 CLDN19 link to infopage 0.680103 1.479160e-15 5.125880e-11 1.046098e-12
50 8044640 8098725 NM_033178 DUX4 link to infopage 0.678973 1.716070e-15 5.946869e-11 1.189374e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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