[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
7159	7953812	NM_004426	PHC1		polyhomeotic homolog 1 (Drosophila)
7168	7963869	NM_004426	PHC1		polyhomeotic homolog 1 (Drosophila)

Fetching correlation data, please wait...
Getting list of correlations for id 7159.
Getting list of p-values for id 7159.
1 of 2 done.
Getting list of correlations for id 7168.
Getting list of p-values for id 7168.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.168 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7953812	7963869	NM_004426	PHC1	0.983789	1.064300e-78	3.688224e-74	3.688224e-74
2	7963869	7953812	NM_004426	PHC1	0.983789	1.064300e-78	3.688224e-74	1.844112e-74
3	7963869	8167656	NM_001005333	MAGED1	0.681791	1.183349e-15	4.100777e-11	1.366926e-11
4	7953812	8167656	NM_001005333	MAGED1	0.655009	3.452869e-14	1.196557e-9	2.991393e-10
5	7963869	7976726	NM_016337	EVL	0.653433	4.167190e-14	1.444098e-9	2.888196e-10
6	7953812	8108050	NM_003202	TCF7	0.650500	5.895117e-14	2.042894e-9	3.404823e-10
7	7963869	8108050	NM_003202	TCF7	0.649732	6.451741e-14	2.235786e-9	3.193980e-10
8	7963869	7923917	NM_005449	FAIM3	0.639575	2.076904e-13	7.197303e-9	8.996629e-10
9	7953812	7986049	NM_022769	CRTC3	0.638818	2.262029e-13	7.838835e-9	8.709816e-10
10	7953812	7976726	NM_016337	EVL	0.638458	2.355616e-13	8.163152e-9	8.163152e-10
11	7953812	8142087	NM_020725	ATXN7L1	0.635191	3.394809e-13	1.176437e-8	1.069488e-9
12	7963869	7986049	NM_022769	CRTC3	0.633311	4.180706e-13	1.448782e-8	1.207318e-9
13	7963869	8010161	NM_006640	SEPT9	0.631662	5.013324e-13	1.737317e-8	1.336398e-9
14	7953812	7923917	NM_005449	FAIM3	0.629142	6.602344e-13	2.287976e-8	1.634269e-9
15	7953812	8025142	NM_001130955	ARHGEF18	0.628506	7.074609e-13	2.451635e-8	1.634423e-9
16	7953812	8109528	NM_001037332	CYFIP2	0.627560	7.838557e-13	2.716373e-8	1.697733e-9
17	7953812	7905754	NM_020452	ATP8B2	0.625651	9.629049e-13	3.336850e-8	1.962853e-9
18	7963869	8109528	NM_001037332	CYFIP2	0.622317	1.374697e-12	4.763874e-8	2.646597e-9
19	7963869	8142087	NM_020725	ATXN7L1	0.619397	1.871192e-12	6.484428e-8	3.412857e-9
20	7953812	8164343	NM_001035254	FAM102A	0.618005	2.164986e-12	7.502541e-8	3.751271e-9
21	7963869	8025142	NM_001130955	ARHGEF18	0.617192	2.356781e-12	8.167188e-8	3.889137e-9
22	7963869	7905754	NM_020452	ATP8B2	0.616971	2.411601e-12	8.357161e-8	3.798710e-9
23	7953812	8010161	NM_006640	SEPT9	0.616144	2.628174e-12	9.107674e-8	3.959858e-9
24	7963869	8140297	NM_001099415	POM121C	0.616021	2.661954e-12	9.224735e-8	3.843640e-9
25	7953812	8140297	NM_001099415	POM121C	0.614502	3.115137e-12	1.079520e-7	4.318078e-9
26	7953812	8088642	NM_015541	LRIG1	0.613715	3.378514e-12	1.170790e-7	4.503039e-9
27	7963869	8164343	NM_001035254	FAM102A	0.611975	4.039451e-12	1.399831e-7	5.184560e-9
28	7953812	8158839	NM_013318	BAT2L1	0.606787	6.835843e-12	2.368893e-7	8.460333e-9
29	7963869	7955045	BC008360	FAM113B	0.606477	7.052117e-12	2.443841e-7	8.427037e-9
30	7953812	8012423	NM_025099	C17orf68	0.605547	7.741057e-12	2.682586e-7	8.941952e-9
31	7953812	8131253	NM_001037165	FOXK1	0.602990	9.986035e-12	3.460561e-7	1.116310e-8
32	7953812	7953200	NM_001759	CCND2	0.602655	1.032391e-11	3.577647e-7	1.118015e-8
33	7963869	8088642	NM_015541	LRIG1	0.602425	1.056134e-11	3.659928e-7	1.109069e-8
34	7963869	7953200	NM_001759	CCND2	0.602204	1.079425e-11	3.740638e-7	1.100188e-8
35	7953812	7955045	BC008360	FAM113B	0.601489	1.158442e-11	4.014464e-7	1.146990e-8
36	7963869	7979611	NM_006977	ZBTB25	0.596880	1.818895e-11	6.303198e-7	1.750888e-8
37	7963869	7955331	NM_003076	SMARCD1	0.592028	2.901991e-11	1.005656e-6	2.717989e-8
38	7963869	8158839	NM_013318	BAT2L1	0.589703	3.620019e-11	1.254481e-6	3.301267e-8
39	7963869	8131253	NM_001037165	FOXK1	0.586568	4.864235e-11	1.685652e-6	4.322185e-8
40	7953812	8134470	NM_003496	TRRAP	0.584867	5.702315e-11	1.976080e-6	4.940201e-8
41	7963869	8133275	NM_172020	POM121	0.581583	7.730972e-11	2.679091e-6	6.534368e-8
42	7953812	8128138	NM_014611	MDN1	0.580132	8.834150e-11	3.061386e-6	7.289015e-8
43	7953812	7979611	NM_006977	ZBTB25	0.578701	1.006885e-10	3.489258e-6	8.114554e-8
44	7953812	8133275	NM_172020	POM121	0.578601	1.016138e-10	3.521324e-6	8.003009e-8
45	7963869	8134470	NM_003496	TRRAP	0.576946	1.181233e-10	4.093445e-6	9.096544e-8
46	7963869	8148317	NM_002467	MYC	0.576865	1.189927e-10	4.123573e-6	8.964290e-8
47	7953812	7929990	NM_015062	PPRC1	0.576704	1.207433e-10	4.184239e-6	8.902636e-8
48	7953812	7955331	NM_003076	SMARCD1	0.576581	1.221041e-10	4.231397e-6	8.815410e-8
49	7963869	8010188	NM_001142640	TNRC6C	0.576561	1.223189e-10	4.238838e-6	8.650691e-8
50	7953812	8062623	NM_002660	PLCG1	0.575356	1.363994e-10	4.726786e-6	9.453573e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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