[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5573	7918634	NM_006608	PHTF1		putative homeodomain transcription factor 1

Fetching correlation data, please wait...
Getting list of correlations for id 5573.
Getting list of p-values for id 5573.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.120 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7918634	8148358	NM_016018	PHF20L1	0.707932	3.055767e-17	5.294727e-13	5.294727e-13
2	7918634	7978932	NM_006939	SOS2	0.703271	6.037395e-17	1.046099e-12	5.230497e-13
3	7918634	7935011	NM_014912	CPEB3	0.696995	1.479615e-16	2.563729e-12	8.545763e-13
4	7918634	7950838	NM_007166	PICALM	0.696777	1.525835e-16	2.643814e-12	6.609534e-13
5	7918634	8019885	NM_015295	SMCHD1	0.695310	1.875077e-16	3.248946e-12	6.497893e-13
6	7918634	8019877	NM_015295	SMCHD1	0.689756	4.045733e-16	7.010042e-12	1.168340e-12
7	7918634	8099410	NM_148894	BOD1L	0.689428	4.231139e-16	7.331294e-12	1.047328e-12
8	7918634	7909400	NM_002389	CD46	0.681036	1.307881e-15	2.266165e-11	2.832706e-12
9	7918634	8099449	NM_033535	FBXL5	0.680817	1.346258e-15	2.332660e-11	2.591845e-12
10	7918634	8103601	NM_001012967	DDX60L	0.675099	2.841491e-15	4.923451e-11	4.923451e-12
11	7918634	8135363	NM_002649	PIK3CG	0.673630	3.433636e-15	5.949461e-11	5.408601e-12
12	7918634	7925201	NM_016374	ARID4B	0.672797	3.820555e-15	6.619876e-11	5.516563e-12
13	7918634	8107330	NM_001127511	APC	0.672297	4.073032e-15	7.057342e-11	5.428725e-12
14	7918634	7965123	NM_001143885	PPP1R12A	0.671112	4.737254e-15	8.208240e-11	5.863029e-12
15	7918634	7979044	NM_020921	NIN	0.670434	5.163052e-15	8.946020e-11	5.964014e-12
16	7918634	8083494	NM_007288	MME	0.670330	5.231910e-15	9.065331e-11	5.665832e-12
17	7918634	7962185	NR_004854	AMN1	0.669998	5.456524e-15	9.454520e-11	5.561482e-12
18	7918634	7936596	NM_153810	C10orf46	0.667765	7.231705e-15	1.253038e-10	6.961320e-12
19	7918634	8163775	NM_001080497	MEGF9	0.667321	7.645360e-15	1.324712e-10	6.972166e-12
20	7918634	8102817	NM_201999	ELF2	0.666497	8.475936e-15	1.468625e-10	7.343127e-12
21	7918634	8097148	NM_015312	KIAA1109	0.665628	9.447047e-15	1.636890e-10	7.794714e-12
22	7918634	8050302	NM_004850	ROCK2	0.664380	1.103183e-14	1.911485e-10	8.688566e-12
23	7918634	7954810	NM_198578	LRRK2	0.664346	1.107850e-14	1.919572e-10	8.345967e-12
24	7918634	7957759	NM_181861	APAF1	0.662886	1.326778e-14	2.298909e-10	9.578788e-12
25	7918634	8123230	NR_003288	LOC729603	0.662672	1.362245e-14	2.360362e-10	9.441449e-12
26	7918634	7922707	NM_021133	RNASEL	0.662447	1.400626e-14	2.426865e-10	9.334097e-12
27	7918634	8138922	NM_015483	KBTBD2	0.660593	1.758019e-14	3.046119e-10	1.128192e-11
28	7918634	8056060	NM_013450	BAZ2B	0.660481	1.782314e-14	3.088215e-10	1.102934e-11
29	7918634	7933877	NM_004241	JMJD1C	0.659357	2.043885e-14	3.541439e-10	1.221186e-11
30	7918634	8045514	NM_001001664	SPOPL	0.659100	2.108670e-14	3.653692e-10	1.217897e-11
31	7918634	7989037	NM_004748	CCPG1	0.657959	2.421554e-14	4.195827e-10	1.353493e-11
32	7918634	8157941	NM_001099270	ZBTB34	0.656983	2.724177e-14	4.720181e-10	1.475056e-11
33	7918634	8147580	NM_017890	VPS13B	0.656354	2.938726e-14	5.091931e-10	1.543009e-11
34	7918634	7922504	NM_022457	RFWD2	0.656308	2.954888e-14	5.119935e-10	1.505863e-11
35	7918634	8091658	NM_020307	CCNL1	0.655941	3.088185e-14	5.350899e-10	1.528828e-11
36	7918634	7925257	NM_000081	LYST	0.655482	3.262831e-14	5.653507e-10	1.570419e-11
37	7918634	8068105	NR_027655	BACH1	0.655320	3.326699e-14	5.764171e-10	1.557884e-11
38	7918634	8022488	NM_138340	ABHD3	0.653632	4.069814e-14	7.051767e-10	1.855728e-11
39	7918634	7954711	NM_018169	C12orf35	0.651972	4.955520e-14	8.586429e-10	2.201648e-11
40	7918634	8106602	NM_014733	ZFYVE16	0.651949	4.969005e-14	8.609795e-10	2.152449e-11
41	7918634	8084541	NM_001009921	VPS8	0.651313	5.356863e-14	9.281837e-10	2.263863e-11
42	7918634	7974621	NM_002892	ARID4A	0.651078	5.507334e-14	9.542557e-10	2.272037e-11
43	7918634	8089285			0.650301	6.034328e-14	1.045568e-9	2.431553e-11
44	7918634	8013431	NM_007202	AKAP10	0.649834	6.374386e-14	1.104490e-9	2.510204e-11
45	7918634	8173766	NM_153252	BRWD3	0.648771	7.219664e-14	1.250951e-9	2.779891e-11
46	7918634	8113358	NM_005668	ST8SIA4	0.648591	7.372817e-14	1.277488e-9	2.777148e-11
47	7918634	7902822	NM_006256	PKN2	0.648281	7.644708e-14	1.324599e-9	2.818295e-11
48	7918634	8016745	NM_001130528	SPAG9	0.647561	8.314124e-14	1.440588e-9	3.001226e-11
49	7918634	7974851	NM_001530	HIF1A	0.647434	8.437594e-14	1.461982e-9	2.983637e-11
50	7918634	8093961	NM_014743	KIAA0232	0.646856	9.023327e-14	1.563472e-9	3.126944e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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