[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
5056	8043367	NM_002665	PLGLB2		plasminogen-like B2
5057	8053602	NM_002665	PLGLB2		plasminogen-like B2

Fetching correlation data, please wait...
Getting list of correlations for id 5056.
Getting list of p-values for id 5056.
1 of 2 done.
Getting list of correlations for id 5057.
Getting list of p-values for id 5057.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.192 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8043367	8053602	NM_002665	PLGLB2	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8053602	8043367	NM_002665	PLGLB2	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8053602	8053610	NM_022662	ANAPC1	0.587789	4.337408e-11	1.503086e-6	5.010285e-7
4	8043367	8053610	NM_022662	ANAPC1	0.587789	4.337408e-11	1.503086e-6	3.757714e-7
5	8043367	8154059	NM_003070	SMARCA2	0.587749	4.353555e-11	1.508681e-6	3.017362e-7
6	8053602	8154059	NM_003070	SMARCA2	0.587749	4.353555e-11	1.508681e-6	2.514468e-7
7	8053602	8063211	NM_181659	NCOA3	0.573207	1.654780e-10	5.734475e-6	8.192107e-7
8	8043367	8063211	NM_181659	NCOA3	0.573207	1.654780e-10	5.734475e-6	7.168093e-7
9	8053602	8014551	NM_007247	SYNRG	0.565680	3.220330e-10	1.115973e-5	1.239970e-6
10	8043367	8014551	NM_007247	SYNRG	0.565680	3.220330e-10	1.115973e-5	1.115973e-6
11	8043367	8129953	NM_006734	HIVEP2	0.560301	5.130789e-10	1.778024e-5	1.616385e-6
12	8053602	8129953	NM_006734	HIVEP2	0.560301	5.130789e-10	1.778024e-5	1.481686e-6
13	8053602	8150287	NM_023034	WHSC1L1	0.559181	5.646933e-10	1.956888e-5	1.505298e-6
14	8043367	8150287	NM_023034	WHSC1L1	0.559181	5.646933e-10	1.956888e-5	1.397777e-6
15	8053602	7962831	NM_001240	CCNT1	0.558846	5.811225e-10	2.013822e-5	1.342548e-6
16	8043367	7962831	NM_001240	CCNT1	0.558846	5.811225e-10	2.013822e-5	1.258639e-6
17	8043367	8135277	NM_182931	MLL5	0.556836	6.895208e-10	2.389465e-5	1.405568e-6
18	8053602	8135277	NM_182931	MLL5	0.556836	6.895208e-10	2.389465e-5	1.327481e-6
19	8053602	8054614	NM_022662	ANAPC1	0.555062	8.011148e-10	2.776183e-5	1.461149e-6
20	8043367	8054614	NM_022662	ANAPC1	0.555062	8.011148e-10	2.776183e-5	1.388092e-6
21	8043367	8123494	NM_032448	FAM120B	0.554702	8.258370e-10	2.861855e-5	1.362788e-6
22	8053602	8123494	NM_032448	FAM120B	0.554702	8.258370e-10	2.861855e-5	1.300843e-6
23	8053602	8001693	NM_016284	CNOT1	0.554654	8.291460e-10	2.873322e-5	1.249271e-6
24	8043367	8001693	NM_016284	CNOT1	0.554654	8.291460e-10	2.873322e-5	1.197218e-6
25	8043367	8018935			0.552889	9.616119e-10	3.332370e-5	1.332948e-6
26	8053602	8018935			0.552889	9.616119e-10	3.332370e-5	1.281681e-6
27	8043367	8100251	NM_015030	FRYL	0.552744	9.733939e-10	3.373199e-5	1.249333e-6
28	8053602	8100251	NM_015030	FRYL	0.552744	9.733939e-10	3.373199e-5	1.204714e-6
29	8053602	8166826	NM_001039590	USP9X	0.552376	1.003775e-9	3.478483e-5	1.199477e-6
30	8043367	8166826	NM_001039590	USP9X	0.552376	1.003775e-9	3.478483e-5	1.159494e-6
31	8043367	7947694	NM_001008938	CKAP5	0.550259	1.197358e-9	4.149325e-5	1.338492e-6
32	8053602	7947694	NM_001008938	CKAP5	0.550259	1.197358e-9	4.149325e-5	1.296664e-6
33	8053602	8152782	NM_014846	KIAA0196	0.547546	1.498287e-9	5.192163e-5	1.573383e-6
34	8043367	8152782	NM_014846	KIAA0196	0.547546	1.498287e-9	5.192163e-5	1.527107e-6
35	8053602	8068289	NM_138927	SON	0.546375	1.649481e-9	5.716110e-5	1.633174e-6
36	8043367	8068289	NM_138927	SON	0.546375	1.649481e-9	5.716110e-5	1.587808e-6
37	8043367	8122013	NM_032438	L3MBTL3	0.544829	1.871611e-9	6.485880e-5	1.752941e-6
38	8053602	8122013	NM_032438	L3MBTL3	0.544829	1.871611e-9	6.485880e-5	1.706810e-6
39	8043367	8012961	NM_006311	NCOR1	0.544035	1.996638e-9	6.919149e-5	1.774141e-6
40	8053602	8012961	NM_006311	NCOR1	0.544035	1.996638e-9	6.919149e-5	1.729787e-6
41	8043367	8109226	NM_001804	CDX1	-0.541850	2.383521e-9	8.259853e-5	2.014598e-6
42	8053602	8109226	NM_001804	CDX1	-0.541850	2.383521e-9	8.259853e-5	1.966632e-6
43	8043367	7931405	NM_018461	PPP2R2D	0.541333	2.484973e-9	8.611426e-5	2.002657e-6
44	8053602	7931405	NM_018461	PPP2R2D	0.541333	2.484973e-9	8.611426e-5	1.957142e-6
45	8053602	8002592	NM_001030007	AP1G1	0.540536	2.649557e-9	9.181776e-5	2.040395e-6
46	8043367	8002592	NM_001030007	AP1G1	0.540536	2.649557e-9	9.181776e-5	1.996038e-6
47	8043367	8051670	NM_005633	SOS1	0.539930	2.781832e-9	9.640162e-5	2.051098e-6
48	8053602	8051670	NM_005633	SOS1	0.539930	2.781832e-9	9.640162e-5	2.008367e-6
49	8053602	7961489	NM_016312	WBP11	0.539924	2.783184e-9	9.644845e-5	1.968336e-6
50	8043367	7961489	NM_016312	WBP11	0.539924	2.783184e-9	9.644845e-5	1.928969e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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