[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5959	8024331	NR_026557	PLK5P		polo-like kinase 5, pseudogene

Fetching correlation data, please wait...
Getting list of correlations for id 5959.
Getting list of p-values for id 5959.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.137 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8024331	7998668	NM_144603	NOXO1	0.796776	2.870512e-24	4.973736e-20	4.973736e-20
2	8024331	8032034	NM_001136263	C2CD4C	0.795036	4.245252e-24	7.355747e-20	3.677874e-20
3	8024331	8170753	NM_014370	SRPK3	0.792766	7.032682e-24	1.218553e-19	4.061842e-20
4	8024331	8065327	NM_033176	NKX2-4	0.790694	1.108815e-23	1.921244e-19	4.803109e-20
5	8024331	8098721	ENST00000362702		0.790550	1.144373e-23	1.982855e-19	3.965711e-20
6	8024331	7997733	NM_005251	FOXC2	0.788738	1.696212e-23	2.939026e-19	4.898377e-20
7	8024331	8024655	NM_001135580	C19orf71	0.783620	5.053418e-23	8.756058e-19	1.250865e-19
8	8024331	8093425	NM_000203	IDUA	0.782711	6.114819e-23	1.059515e-18	1.324393e-19
9	8024331	8074558	NM_023004	RTN4R	0.782631	6.217689e-23	1.077339e-18	1.197043e-19
10	8024331	8039759	NM_198458	ZNF497	0.781793	7.406778e-23	1.283372e-18	1.283372e-19
11	8024331	7976669	NM_001127258	HHIPL1	0.780418	9.854910e-23	1.707560e-18	1.552327e-19
12	8024331	7949015	NM_001144936	C11orf95	0.779835	1.111663e-22	1.926179e-18	1.605149e-19
13	8024331	8006562	NM_033315	RASL10B	0.779203	1.266054e-22	2.193692e-18	1.687455e-19
14	8024331	8092888	NM_138399	TMEM44	0.778860	1.358458e-22	2.353801e-18	1.681286e-19
15	8024331	8039524	NM_152600	ZNF579	0.778707	1.401673e-22	2.428680e-18	1.619120e-19
16	8024331	7947928	NM_031909	C1QTNF4	0.778663	1.414297e-22	2.450552e-18	1.531595e-19
17	8024331	8048460	NM_003936	CDK5R2	0.777763	1.700301e-22	2.946111e-18	1.733006e-19
18	8024331	8080158	NM_080865	GPR62	0.776507	2.194794e-22	3.802920e-18	2.112733e-19
19	8024331	8024429	NM_000479	AMH	0.774417	3.345499e-22	5.796747e-18	3.050919e-19
20	8024331	8027222	NM_153221	CILP2	0.773833	3.760106e-22	6.515136e-18	3.257568e-19
21	8024331	8033825	NM_015719	COL5A3	0.773068	4.379811e-22	7.588899e-18	3.613761e-19
22	8024331	7949033	NM_014067	MACROD1	0.772739	4.676593e-22	8.103132e-18	3.683242e-19
23	8024331	8040479	NM_182828	GDF7	0.770626	7.102226e-22	1.230603e-17	5.350446e-19
24	8024331	8075934	NM_014550	CARD10	0.769616	8.658860e-22	1.500321e-17	6.251336e-19
25	8024331	8159670	NM_006647	NOXA1	0.769484	8.884937e-22	1.539493e-17	6.157972e-19
26	8024331	8026735	NM_133644	GTPBP3	0.768803	1.014841e-21	1.758416e-17	6.763137e-19
27	8024331	8162472	NM_021570	BARX1	0.768571	1.061740e-21	1.839677e-17	6.813618e-19
28	8024331	8159142	NM_000093	COL5A1	0.768334	1.111923e-21	1.926630e-17	6.880820e-19
29	8024331	8062948	NM_014276	RBPJL	0.767940	1.200269e-21	2.079706e-17	7.171401e-19
30	8024331	8171786	NM_153270	KLHL34	0.767528	1.300192e-21	2.252842e-17	7.509473e-19
31	8024331	8117172	NM_138574	HDGFL1	0.767510	1.304764e-21	2.260764e-17	7.292789e-19
32	8024331	7908978	NM_014827	ZC3H11A	-0.766874	1.475283e-21	2.556223e-17	7.988196e-19
33	8024331	7968260	NM_145657	GSX1	0.766255	1.662248e-21	2.880177e-17	8.727809e-19
34	8024331	8035506	NM_004750	CRLF1	0.766131	1.702343e-21	2.949650e-17	8.675442e-19
35	8024331	8000467	NM_001109763	GSG1L	0.765112	2.070052e-21	3.586780e-17	1.024794e-18
36	8024331	7992269	ENST00000301714		0.764851	2.175988e-21	3.770334e-17	1.047315e-18
37	8024331	8110872	NM_033267	IRX2	0.764128	2.497591e-21	4.327575e-17	1.169615e-18
38	8024331	7967039	NM_002442	MSI1	0.763927	2.595206e-21	4.496713e-17	1.183346e-18
39	8024331	7992049	NM_207112	HAGHL	0.763590	2.766742e-21	4.793934e-17	1.229214e-18
40	8024331	8104268	NM_001003841	SLC6A19	0.763446	2.843256e-21	4.926510e-17	1.231627e-18
41	8024331	8093826	NM_000683	ADRA2C	0.762551	3.368537e-21	5.836664e-17	1.423577e-18
42	8024331	8024995	NM_004558	NRTN	0.762174	3.617232e-21	6.267578e-17	1.492280e-18
43	8024331	8034605	NM_052850	GADD45GIP1	0.761596	4.033067e-21	6.988095e-17	1.625138e-18
44	8024331	7998634	NM_001009606	HS3ST6	0.761573	4.050322e-21	7.017992e-17	1.594998e-18
45	8024331	8133704	NM_001110199	SRRM3	0.761566	4.056087e-21	7.027982e-17	1.561774e-18
46	8024331	7919582	XR_039086	LOC100133075	0.761372	4.206379e-21	7.288393e-17	1.584433e-18
47	8024331	8050719	NM_006277	ITSN2	-0.761128	4.403792e-21	7.630451e-17	1.623500e-18
48	8024331	8010696	NM_148896	NPB	0.760937	4.563959e-21	7.907972e-17	1.647494e-18
49	8024331	8019693	NM_148896	NPB	0.760937	4.563959e-21	7.907972e-17	1.613872e-18
50	8024331	7911506	NM_004421	DVL1	0.760930	4.570412e-21	7.919152e-17	1.583830e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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