[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2961	8052719	NM_020143	PNO1		partner of NOB1 homolog (S. cerevisiae)

Fetching correlation data, please wait...
Getting list of correlations for id 2961.
Getting list of p-values for id 2961.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.118 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8052719	8110546	NM_014757	MAML1	0.760757	4.720545e-21	8.179288e-17	8.179288e-17
2	8052719	8092520	BC137178	C3orf70	0.727262	1.563209e-18	2.708572e-14	1.354286e-14
3	8052719	8024038	NM_001700	AZU1	0.719039	5.707033e-18	9.888577e-14	3.296192e-14
4	8052719	8032265	NM_203304	MEX3D	0.712054	1.654688e-17	2.867078e-13	7.167694e-14
5	8052719	8143708	AK125575	ZNF786	0.709285	2.501345e-17	4.334080e-13	8.668161e-14
6	8052719	8165453	NM_001013653	LRRC26	0.706232	3.923064e-17	6.797494e-13	1.132916e-13
7	8052719	7937363	NM_007183	PKP3	0.705906	4.115147e-17	7.130316e-13	1.018617e-13
8	8052719	8137959	NM_001080495	TNRC18	0.704219	5.262705e-17	9.118689e-13	1.139836e-13
9	8052719	7977234	BC041103	C14orf180	0.698024	1.279452e-16	2.216907e-12	2.463230e-13
10	8052719	8062034	NM_021202	TP53INP2	0.696540	1.577623e-16	2.733547e-12	2.733547e-13
11	8052719	8137707	hsa-mir-339		0.695012	1.954803e-16	3.387087e-12	3.079170e-13
12	8052719	8071234	NM_002688	SEPT5	0.688822	4.596603e-16	7.964534e-12	6.637111e-13
13	8052719	8032214	NM_000156	GAMT	0.682176	1.124391e-15	1.948232e-11	1.498640e-12
14	8052719	7977432	NM_025268	TMEM121	0.681160	1.286611e-15	2.229310e-11	1.592364e-12
15	8052719	7976783	NM_003836	DLK1	0.680762	1.355985e-15	2.349516e-11	1.566344e-12
16	8052719	7991459	NM_020211	RGMA	0.680252	1.450406e-15	2.513118e-11	1.570699e-12
17	8052719	8030022	NM_000836	GRIN2D	0.679814	1.536686e-15	2.662617e-11	1.566245e-12
18	8052719	8169519	NM_019045	WDR44	-0.676853	2.263695e-15	3.922304e-11	2.179058e-12
19	8052719	8034940	NM_000435	NOTCH3	0.675929	2.552346e-15	4.422449e-11	2.327605e-12
20	8052719	8074384	NM_005315	GSC2	0.675873	2.570767e-15	4.454368e-11	2.227184e-12
21	8052719	7998577	NM_002513	NME3	0.675137	2.827719e-15	4.899588e-11	2.333137e-12
22	8052719	8053022	NM_001965	EGR4	0.674119	3.224370e-15	5.586865e-11	2.539484e-12
23	8052719	8131379	ENST00000384488		0.672554	3.941062e-15	6.828678e-11	2.968991e-12
24	8052719	8130470	AK125637		0.671972	4.245797e-15	7.356693e-11	3.065289e-12
25	8052719	7914232	NM_001003682	TMEM200B	0.671649	4.424122e-15	7.665677e-11	3.066271e-12
26	8052719	8104305	ENST00000364156		0.670912	4.859452e-15	8.419973e-11	3.238451e-12
27	8052719	7900001	NM_178548	TFAP2E	0.669758	5.624714e-15	9.745941e-11	3.609608e-12
28	8052719	8121216	NM_021620	PRDM13	0.669370	5.908060e-15	1.023690e-10	3.656034e-12
29	8052719	7937059	NM_174937	TCERG1L	0.668987	6.200682e-15	1.074392e-10	3.704801e-12
30	8052719	8049620	ENST00000408994		0.667308	7.658352e-15	1.326963e-10	4.423209e-12
31	8052719	7919568			0.666286	8.702235e-15	1.507836e-10	4.863988e-12
32	8052719	8157534	NM_007018	CEP110	-0.664729	1.056377e-14	1.830384e-10	5.719950e-12
33	8052719	8027222	NM_153221	CILP2	0.662774	1.345338e-14	2.331067e-10	7.063838e-12
34	8052719	8059864	NM_001485	GBX2	0.661471	1.578900e-14	2.735761e-10	8.046355e-12
35	8052719	8110562	NM_145867	LTC4S	0.661199	1.632453e-14	2.828551e-10	8.081575e-12
36	8052719	8013112	NM_016084	RASD1	0.660518	1.774245e-14	3.074235e-10	8.539542e-12
37	8052719	8101507	NM_006168	NKX6-1	0.658586	2.244532e-14	3.889100e-10	1.051108e-11
38	8052719	8037563	NM_006663	PPP1R13L	0.658469	2.276556e-14	3.944588e-10	1.038050e-11
39	8052719	8078435	NM_001039111	TRIM71	0.658349	2.309861e-14	4.002296e-10	1.026230e-11
40	8052719	8059739	NM_024409	NPPC	0.658144	2.367881e-14	4.102827e-10	1.025707e-11
41	8052719	8047736			0.657754	2.482287e-14	4.301059e-10	1.049039e-11
42	8052719	8064676	NM_145762	GFRA4	0.657580	2.535084e-14	4.392541e-10	1.045843e-11
43	8052719	7905020	NM_000798	DRD5	0.657309	2.619353e-14	4.538553e-10	1.055477e-11
44	8052719	8176117	NM_021806	FAM3A	0.657114	2.681694e-14	4.646571e-10	1.056039e-11
45	8052719	7911376	NM_001142467	HES4	0.656888	2.755560e-14	4.774559e-10	1.061013e-11
46	8052719	8067585	NM_080606	BHLHE23	0.656720	2.812120e-14	4.872561e-10	1.059252e-11
47	8052719	7909992	NM_015176	FBXO28	-0.656620	2.846013e-14	4.931286e-10	1.049210e-11
48	8052719	8092468	NM_033259	CAMK2N2	0.655935	3.090346e-14	5.354643e-10	1.115551e-11
49	8052719	8082667	NM_152395	NUDT16	0.655258	3.351607e-14	5.807329e-10	1.185169e-11
50	8052719	8153862	NM_001024678	LRRC24	0.654767	3.554421e-14	6.158746e-10	1.231749e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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