[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 5 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
1899	7969300	NM_198441	PRR20A		proline rich 20A
1900	7969306	NM_198441	PRR20A		proline rich 20A
1901	7969312	NM_198441	PRR20A		proline rich 20A
1902	7969318	NM_198441	PRR20A		proline rich 20A
1903	7969324	NM_198441	PRR20A		proline rich 20A

Fetching correlation data, please wait...
Getting list of correlations for id 1899.
Getting list of p-values for id 1899.
1 of 5 done.
Getting list of correlations for id 1900.
Getting list of p-values for id 1900.
2 of 5 done.
Getting list of correlations for id 1901.
Getting list of p-values for id 1901.
3 of 5 done.
Getting list of correlations for id 1902.
Getting list of p-values for id 1902.
4 of 5 done.
Getting list of correlations for id 1903.
Getting list of p-values for id 1903.
5 of 5 done.
Calculating corrections for multiple testing (n=86635), please wait...
Done; whole program took 0.539 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7969318	7969300	NM_198441	PRR20A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7969300	7969312	NM_198441	PRR20A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	7969318	7969324	NM_198441	PRR20A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
4	7969318	7969312	NM_198441	PRR20A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
5	7969318	7969306	NM_198441	PRR20A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
6	7969306	7969312	NM_198441	PRR20A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
7	7969306	7969318	NM_198441	PRR20A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
8	7969324	7969318	NM_198441	PRR20A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
9	7969300	7969324	NM_198441	PRR20A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
10	7969300	7969318	NM_198441	PRR20A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
11	7969324	7969312	NM_198441	PRR20A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
12	7969324	7969300	NM_198441	PRR20A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
13	7969300	7969306	NM_198441	PRR20A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
14	7969306	7969324	NM_198441	PRR20A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
15	7969324	7969306	NM_198441	PRR20A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
16	7969306	7969300	NM_198441	PRR20A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
17	7969312	7969300	NM_198441	PRR20A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
18	7969312	7969306	NM_198441	PRR20A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
19	7969312	7969318	NM_198441	PRR20A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
20	7969312	7969324	NM_198441	PRR20A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
21	7969318	8103011	NM_199324	OTUD4	-0.725602	2.038073e-18	1.765684e-13	8.408020e-15
22	7969306	8103011	NM_199324	OTUD4	-0.725602	2.038073e-18	1.765684e-13	8.025838e-15
23	7969300	8103011	NM_199324	OTUD4	-0.725602	2.038073e-18	1.765684e-13	7.676888e-15
24	7969324	8103011	NM_199324	OTUD4	-0.725602	2.038073e-18	1.765684e-13	7.357018e-15
25	7969312	8103011	NM_199324	OTUD4	-0.725602	2.038073e-18	1.765684e-13	7.062737e-15
26	7969324	8100834	NM_002092	GRSF1	-0.704666	4.931000e-17	4.271972e-12	1.643066e-13
27	7969312	8100834	NM_002092	GRSF1	-0.704666	4.931000e-17	4.271972e-12	1.582212e-13
28	7969306	8100834	NM_002092	GRSF1	-0.704666	4.931000e-17	4.271972e-12	1.525704e-13
29	7969300	8100834	NM_002092	GRSF1	-0.704666	4.931000e-17	4.271972e-12	1.473094e-13
30	7969318	8100834	NM_002092	GRSF1	-0.704666	4.931000e-17	4.271972e-12	1.423991e-13
31	7969318	8059689	NM_005381	NCL	-0.697345	1.408429e-16	1.220193e-11	3.936106e-13
32	7969312	8059689	NM_005381	NCL	-0.697345	1.408429e-16	1.220193e-11	3.813102e-13
33	7969324	8059689	NM_005381	NCL	-0.697345	1.408429e-16	1.220193e-11	3.697554e-13
34	7969306	8059689	NM_005381	NCL	-0.697345	1.408429e-16	1.220193e-11	3.588802e-13
35	7969300	8059689	NM_005381	NCL	-0.697345	1.408429e-16	1.220193e-11	3.486265e-13
36	7969306	7943160	NR_002569	SCARNA9	-0.695297	1.878442e-16	1.627388e-11	4.520522e-13
37	7969312	7943160	NR_002569	SCARNA9	-0.695297	1.878442e-16	1.627388e-11	4.398346e-13
38	7969300	7943160	NR_002569	SCARNA9	-0.695297	1.878442e-16	1.627388e-11	4.282600e-13
39	7969324	7943160	NR_002569	SCARNA9	-0.695297	1.878442e-16	1.627388e-11	4.172790e-13
40	7969318	7943160	NR_002569	SCARNA9	-0.695297	1.878442e-16	1.627388e-11	4.068470e-13
41	7969300	7903281	NM_012243	SLC35A3	-0.693822	2.307979e-16	1.999517e-11	4.876872e-13
42	7969312	7903281	NM_012243	SLC35A3	-0.693822	2.307979e-16	1.999517e-11	4.760756e-13
43	7969324	7903281	NM_012243	SLC35A3	-0.693822	2.307979e-16	1.999517e-11	4.650040e-13
44	7969306	7903281	NM_012243	SLC35A3	-0.693822	2.307979e-16	1.999517e-11	4.544358e-13
45	7969318	7903281	NM_012243	SLC35A3	-0.693822	2.307979e-16	1.999517e-11	4.443372e-13
46	7969318	7939137	NM_006360	EIF3M	-0.688422	4.853728e-16	4.205027e-11	9.141364e-13
47	7969312	7939137	NM_006360	EIF3M	-0.688422	4.853728e-16	4.205027e-11	8.946867e-13
48	7969300	7939137	NM_006360	EIF3M	-0.688422	4.853728e-16	4.205027e-11	8.760474e-13
49	7969324	7939137	NM_006360	EIF3M	-0.688422	4.853728e-16	4.205027e-11	8.581689e-13
50	7969306	7939137	NM_006360	EIF3M	-0.688422	4.853728e-16	4.205027e-11	8.410055e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation