[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
688	8037290	NM_002784	PSG9		pregnancy specific beta-1-glycoprotein 9

Fetching correlation data, please wait...
Getting list of correlations for id 688.
Getting list of p-values for id 688.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.126 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8037290	8165665	NC_001807		-0.564583	3.543720e-10	6.140203e-6	6.140203e-6
2	8037290	7910134	NM_031944	MIXL1	0.549156	1.311898e-9	2.273126e-5	1.136563e-5
3	8037290	8170786	AF514420	LCA10	0.545751	1.735987e-9	3.007945e-5	1.002648e-5
4	8037290	8129120	NM_001085480	FAM162B	0.540123	2.739101e-9	4.746040e-5	1.186510e-5
5	8037290	7992716	NM_001135086	PRSS41	0.536670	3.608386e-9	6.252251e-5	1.250450e-5
6	8037290	8165661	NC_001807		-0.529360	6.402869e-9	1.109425e-4	1.849042e-5
7	8037290	8002262	ENST00000363109		0.526908	7.737645e-9	1.340702e-4	1.915288e-5
8	8037290	7937247	NM_130784	SYCE1	0.525754	8.454695e-9	1.464945e-4	1.831181e-5
9	8037290	8144047	NM_007349	PAXIP1	-0.523947	9.706358e-9	1.681821e-4	1.868690e-5
10	8037290	7995328			0.523190	1.028171e-8	1.781512e-4	1.781512e-5
11	8037290	8024356	NM_138422	ADAT3	0.520815	1.230635e-8	2.132320e-4	1.938473e-5
12	8037290	7919602			0.520579	1.252806e-8	2.170737e-4	1.808948e-5
13	8037290	8129363	NM_016063	HDDC2	-0.516047	1.758381e-8	3.046747e-4	2.343652e-5
14	8037290	8165690	NC_001807		-0.515716	1.802078e-8	3.122461e-4	2.230329e-5
15	8037290	7897663	NM_007375	TARDBP	-0.514033	2.040957e-8	3.536366e-4	2.357578e-5
16	8037290	7962516	NM_030674	SLC38A1	-0.513821	2.073190e-8	3.592216e-4	2.245135e-5
17	8037290	8094093	NM_080819	GPR78	0.512292	2.320007e-8	4.019876e-4	2.364633e-5
18	8037290	7934513	NM_207012	AP3M1	-0.511307	2.493569e-8	4.320607e-4	2.400337e-5
19	8037290	8073705	NM_181333	PRR5	0.510307	2.682378e-8	4.647756e-4	2.446187e-5
20	8037290	8150014	NM_018250	INTS9	-0.509715	2.800479e-8	4.852390e-4	2.426195e-5
21	8037290	8159541	BC002613	C9orf142	0.509619	2.820190e-8	4.886543e-4	2.326925e-5
22	8037290	8072784	NM_024681	KCTD17	0.505699	3.744096e-8	6.487395e-4	2.948816e-5
23	8037290	8135069	NM_000602	SERPINE1	0.505044	3.924192e-8	6.799448e-4	2.956282e-5
24	8037290	8039474	NM_001145402	FAM71E2	0.504520	4.074294e-8	7.059530e-4	2.941471e-5
25	8037290	8072189	NM_133455	EMID1	0.504492	4.082304e-8	7.073408e-4	2.829363e-5
26	8037290	7948643	NM_013401	RAB3IL1	0.502205	4.805342e-8	8.326216e-4	3.202391e-5
27	8037290	8031483	NM_001136134	RPL28	-0.501838	4.932301e-8	8.546197e-4	3.165258e-5
28	8037290	7910372	NM_001010858	RNF187	0.499301	5.900768e-8	1.022426e-3	3.651522e-5
29	8037290	8062337			0.496696	7.082248e-8	1.227141e-3	4.231521e-5
30	8037290	7940971	NM_033310	KCNK4	0.495802	7.537906e-8	1.306093e-3	4.353644e-5
31	8037290	8024347	NM_079834	SCAMP4	0.495637	7.624759e-8	1.321142e-3	4.261748e-5
32	8037290	8062206	NM_080748	ROMO1	0.495631	7.627760e-8	1.321662e-3	4.130194e-5
33	8037290	8110218	NM_001099408	EIF4E1B	0.495609	7.639719e-8	1.323734e-3	4.011316e-5
34	8037290	8039805	NM_003969	UBE2M	0.493969	8.559966e-8	1.483185e-3	4.362310e-5
35	8037290	8055465	NM_001008540	CXCR4	-0.493927	8.585282e-8	1.487572e-3	4.250205e-5
36	8037290	7975368	NM_001039465	SRSF5	-0.493752	8.689650e-8	1.505656e-3	4.182377e-5
37	8037290	7903980	BC017973	C1orf162	-0.492205	9.668118e-8	1.675195e-3	4.527554e-5
38	8037290	8062971	NM_001048223	DBNDD2	0.492180	9.684933e-8	1.678108e-3	4.416075e-5
39	8037290	7976783	NM_003836	DLK1	0.491778	9.956002e-8	1.725076e-3	4.423273e-5
40	8037290	7924893	ENST00000436555		0.491508	1.014256e-7	1.757401e-3	4.393503e-5
41	8037290	7996174	NM_024598	C16orf57	0.491274	1.030641e-7	1.785792e-3	4.355591e-5
42	8037290	7959946	NM_016155	MMP17	0.490145	1.113449e-7	1.929273e-3	4.593506e-5
43	8037290	8054449	AK095987	FLJ38668	0.489432	1.169033e-7	2.025583e-3	4.710657e-5
44	8037290	8038458	NM_007254	PNKP	0.489167	1.190305e-7	2.062442e-3	4.687369e-5
45	8037290	8066513	NM_002999	SDC4	0.488653	1.232752e-7	2.135989e-3	4.746642e-5
46	8037290	8059014	NM_017521	FEV	0.488615	1.235906e-7	2.141454e-3	4.655335e-5
47	8037290	7950195	hsa-mir-139		0.488571	1.239577e-7	2.147815e-3	4.569819e-5
48	8037290	8032761	NM_030662	MAP2K2	0.487802	1.306093e-7	2.263068e-3	4.714725e-5
49	8037290	8026895	NM_138442	CCDC124	0.487069	1.372610e-7	2.378321e-3	4.853717e-5
50	8037290	8135585	AY143171		-0.486793	1.398442e-7	2.423080e-3	4.846160e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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