[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5967	7926021	NM_001145547	RBM17		RNA binding motif protein 17

Fetching correlation data, please wait...
Getting list of correlations for id 5967.
Getting list of p-values for id 5967.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.136 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7926021	8055060	NM_018383	WDR33	0.838970	5.627629e-29	9.750993e-25	9.750993e-25
2	7926021	7969935	NM_000123	ERCC5	0.836425	1.178589e-28	2.042141e-24	1.021070e-24
3	7926021	7989253	NM_024755	SLTM	0.832857	3.252343e-28	5.635334e-24	1.878445e-24
4	7926021	8135235	NM_004279	PMPCB	0.832830	3.277189e-28	5.678386e-24	1.419597e-24
5	7926021	8006638	NM_024835	GGNBP2	0.830998	5.468094e-28	9.474566e-24	1.894913e-24
6	7926021	8107942	NM_005732	RAD50	0.827749	1.335565e-27	2.314133e-23	3.856889e-24
7	7926021	8043861	NM_015904	EIF5B	0.827144	1.574306e-27	2.727800e-23	3.896857e-24
8	7926021	8156718	NM_002486	NCBP1	0.825454	2.482280e-27	4.301047e-23	5.376309e-24
9	7926021	8080645	NM_012096	APPL1	0.824742	3.002677e-27	5.202738e-23	5.780820e-24
10	7926021	8017421	NM_020198	CCDC47	0.824712	3.027053e-27	5.244975e-23	5.244975e-24
11	7926021	7973902	NM_003136	SRP54	0.823759	3.900025e-27	6.757574e-23	6.143249e-24
12	7926021	7967304	NM_198261	RSRC2	0.821191	7.662667e-27	1.327710e-22	1.106425e-23
13	7926021	8082911	NM_006153	NCK1	0.820288	9.691699e-27	1.679281e-22	1.291754e-23
14	7926021	7943176	NM_004268	MED17	0.820259	9.765630e-27	1.692091e-22	1.208636e-23
15	7926021	7903519	NM_018061	PRPF38B	0.819968	1.052975e-26	1.824490e-22	1.216327e-23
16	7926021	8082940	NM_015396	ARMC8	0.817019	2.244776e-26	3.889524e-22	2.430952e-23
17	7926021	7968931	NM_031431	COG3	0.817005	2.252251e-26	3.902476e-22	2.295574e-23
18	7926021	8078110	NM_014296	CAPN7	0.815778	3.073500e-26	5.325453e-22	2.958585e-23
19	7926021	8152782	NM_014846	KIAA0196	0.815520	3.280440e-26	5.684019e-22	2.991589e-23
20	7926021	8020323	NM_003799	RNMT	0.815276	3.488476e-26	6.044483e-22	3.022241e-23
21	7926021	8009205	NM_007372	DDX42	0.815030	3.710620e-26	6.429391e-22	3.061615e-23
22	7926021	8132943	NM_001762	CCT6A	0.814041	4.754077e-26	8.237389e-22	3.744268e-23
23	7926021	8114861	NM_020117	LARS	0.813248	5.792707e-26	1.003702e-21	4.363923e-23
24	7926021	8146243	NM_032410	HOOK3	0.812690	6.652958e-26	1.152758e-21	4.803159e-23
25	7926021	7969881	NM_003291	TPP2	0.812104	7.690979e-26	1.332616e-21	5.330464e-23
26	7926021	7924923	NM_018230	NUP133	0.811920	8.048105e-26	1.394495e-21	5.363443e-23
27	7926021	8086077	NM_015097	CLASP2	0.811656	8.587956e-26	1.488035e-21	5.511241e-23
28	7926021	8107474	NM_005509	DMXL1	0.810051	1.272660e-25	2.205138e-21	7.875491e-23
29	7926021	7912852	NM_001412	EIF1AX	0.809601	1.420116e-25	2.460636e-21	8.484950e-23
30	7926021	8021015	NM_002647	PIK3C3	0.808622	1.800569e-25	3.119846e-21	1.039949e-22
31	7926021	7938448	NM_017944	USP47	0.808266	1.962112e-25	3.399752e-21	1.096694e-22
32	7926021	8046759	NM_018981	DNAJC10	0.807777	2.207701e-25	3.825283e-21	1.195401e-22
33	7926021	8088219	NM_001112736	C3orf63	0.806208	3.214656e-25	5.570034e-21	1.687889e-22
34	7926021	8101340	NR_003249	HNRPDL	0.805472	3.830079e-25	6.636377e-21	1.951876e-22
35	7926021	7985166	NM_004136	IREB2	0.804632	4.673495e-25	8.097766e-21	2.313647e-22
36	7926021	7973770	NM_016106	SCFD1	0.804588	4.721992e-25	8.181795e-21	2.272721e-22
37	7926021	7917103	NM_015534	ZZZ3	0.804471	4.854663e-25	8.411675e-21	2.273426e-22
38	7926021	8050367	NM_015909	NBAS	0.804455	4.872240e-25	8.442131e-21	2.221613e-22
39	7926021	8057554	NM_014412	CACYBP	0.804427	4.905461e-25	8.499693e-21	2.179408e-22
40	7926021	8087951	NM_018165	PBRM1	0.804185	5.193446e-25	8.998684e-21	2.249671e-22
41	7926021	8106122	NM_002270	TNPO1	0.804170	5.211904e-25	9.030666e-21	2.202602e-22
42	7926021	8082607	NM_014382	ATP2C1	0.804143	5.245269e-25	9.088478e-21	2.163923e-22
43	7926021	8084146	NM_001013439	FXR1	0.803964	5.470654e-25	9.479002e-21	2.204419e-22
44	7926021	7969228	NM_001004127	ALG11	0.803736	5.771620e-25	1.000049e-20	2.272838e-22
45	7926021	7957106	NM_014515	CNOT2	0.803650	5.889980e-25	1.020557e-20	2.267904e-22
46	7926021	7947434	NM_033406	FBXO3	0.802471	7.762908e-25	1.345079e-20	2.924085e-22
47	7926021	8050658	NM_017552	ATAD2B	0.802296	8.086043e-25	1.401069e-20	2.980997e-22
48	7926021	8092564	NM_004593	TRA2B	0.801585	9.540311e-25	1.653050e-20	3.443854e-22
49	7926021	8131519	NM_014660	PHF14	0.801479	9.778396e-25	1.694303e-20	3.457761e-22
50	7926021	7961654	NM_002907	RECQL	0.801385	9.992956e-25	1.731479e-20	3.462959e-22

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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