[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3415	7933999	NM_017987	RUFY2		RUN and FYVE domain containing 2

Fetching correlation data, please wait...
Getting list of correlations for id 3415.
Getting list of p-values for id 3415.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.141 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7933999	8084128	NM_133462	TTC14	0.727600	1.480612e-18	2.565456e-14	2.565456e-14
2	7933999	7916570	NM_145243	OMA1	0.726822	1.677353e-18	2.906349e-14	1.453174e-14
3	7933999	8078110	NM_014296	CAPN7	0.714099	1.215643e-17	2.106344e-13	7.021148e-14
4	7933999	7972723	NM_018011	ARGLU1	0.711822	1.713152e-17	2.968378e-13	7.420945e-14
5	7933999	8144812	NM_006197	PCM1	0.710404	2.117711e-17	3.669357e-13	7.338714e-14
6	7933999	7961287	NM_176888	TAS2R19	0.710229	2.173691e-17	3.766355e-13	6.277258e-14
7	7933999	8023605	NM_176787	PIGN	0.708592	2.771934e-17	4.802930e-13	6.861329e-14
8	7933999	8154394	NM_001039697	SNAPC3	0.704020	5.416424e-17	9.385037e-13	1.173130e-13
9	7933999	8105104	NM_175921	C5orf51	0.703015	6.265355e-17	1.085598e-12	1.206220e-13
10	7933999	7969881	NM_003291	TPP2	0.701101	8.252567e-17	1.429922e-12	1.429922e-13
11	7933999	8023133	NM_004671	PIAS2	0.697473	1.383199e-16	2.396669e-12	2.178790e-13
12	7933999	7916969	NM_005455	ZRANB2	0.695846	1.739328e-16	3.013734e-12	2.511445e-13
13	7933999	8134631	NM_138494	ZNF655	0.695443	1.840431e-16	3.188914e-12	2.453011e-13
14	7933999	8116664	NM_003913	PRPF4B	0.693173	2.525872e-16	4.376578e-12	3.126127e-13
15	7933999	8086077	NM_015097	CLASP2	0.693084	2.557017e-16	4.430543e-12	2.953695e-13
16	7933999	8052845	NM_022173	TIA1	0.692068	2.943506e-16	5.100213e-12	3.187633e-13
17	7933999	7974653	NM_014749	KIAA0586	0.692056	2.948512e-16	5.108887e-12	3.005228e-13
18	7933999	7916185	NM_001009881	ZCCHC11	0.690981	3.419550e-16	5.925054e-12	3.291696e-13
19	7933999	8099649	NM_001358	DHX15	0.688237	4.977770e-16	8.624983e-12	4.539465e-13
20	7933999	7932390	NM_004412	TRDMT1	0.687151	5.768445e-16	9.994985e-12	4.997493e-13
21	7933999	8104838	NM_194283	DNAJC21	0.687133	5.782535e-16	1.001940e-11	4.771142e-13
22	7933999	8100292	NM_015030	FRYL	0.685879	6.850524e-16	1.186990e-11	5.395410e-13
23	7933999	8045697	NM_018151	RIF1	0.685773	6.949567e-16	1.204151e-11	5.235441e-13
24	7933999	8094848	NM_006345	SLC30A9	0.684927	7.786898e-16	1.349236e-11	5.621816e-13
25	7933999	8006377	NM_001098507	ZNF207	0.684667	8.063543e-16	1.397170e-11	5.588681e-13
26	7933999	8122672	NM_015093	TAB2	0.683082	9.967799e-16	1.727121e-11	6.642771e-13
27	7933999	7956908	ENST00000458887		0.682634	1.057977e-15	1.833157e-11	6.789470e-13
28	7933999	7994161	NM_006910	RBBP6	0.681861	1.172512e-15	2.031611e-11	7.255755e-13
29	7933999	7968333	NM_005800	USPL1	0.681355	1.253819e-15	2.172493e-11	7.491355e-13
30	7933999	8021496	NM_020854	KIAA1468	0.680924	1.327300e-15	2.299813e-11	7.666042e-13
31	7933999	7914764	NM_007167	ZMYM6	0.680834	1.343232e-15	2.327418e-11	7.507799e-13
32	7933999	8175492	NM_173694	ATP11C	0.679880	1.523231e-15	2.639302e-11	8.247819e-13
33	7933999	8156718	NM_002486	NCBP1	0.679271	1.650250e-15	2.859388e-11	8.664811e-13
34	7933999	8174893	NM_001081550	THOC2	0.679043	1.700355e-15	2.946204e-11	8.665307e-13
35	7933999	8070046	NR_027873	GCFC1	0.678865	1.740523e-15	3.015805e-11	8.616585e-13
36	7933999	7953878	NM_001004419	CLEC2D	0.678859	1.741873e-15	3.018144e-11	8.383732e-13
37	7933999	8091190	NM_001184	ATR	0.677785	2.004695e-15	3.473536e-11	9.387934e-13
38	7933999	8051882	NM_133259	LRPPRC	0.677572	2.061361e-15	3.571720e-11	9.399263e-13
39	7933999	8058161	NM_006190	ORC2L	0.677550	2.067181e-15	3.581804e-11	9.184112e-13
40	7933999	7916592	NM_001085487	MYSM1	0.677304	2.134611e-15	3.698641e-11	9.246602e-13
41	7933999	8120992	NM_015021	ZNF292	0.676406	2.399129e-15	4.156970e-11	1.013895e-12
42	7933999	7956697	NM_015026	MON2	0.676278	2.439341e-15	4.226646e-11	1.006344e-12
43	7933999	7903032	NM_007358	MTF2	0.676172	2.473012e-15	4.284988e-11	9.965089e-13
44	7933999	7969179	NM_024570	RNASEH2B	0.675781	2.601589e-15	4.507773e-11	1.024494e-12
45	7933999	7999562	NM_002582	PARN	0.675636	2.650793e-15	4.593028e-11	1.020673e-12
46	7933999	8107375	NM_022828	YTHDC2	0.675451	2.715028e-15	4.704329e-11	1.022680e-12
47	7933999	8069711	NM_015565	RNF160	0.675409	2.729849e-15	4.730010e-11	1.006385e-12
48	7933999	7970428	NM_001039650	ZMYM5	0.675356	2.748739e-15	4.762740e-11	9.922374e-13
49	7933999	7988713	NM_017672	TRPM7	0.674853	2.933180e-15	5.082322e-11	1.037208e-12
50	7933999	8079079	NM_005385	NKTR	0.673579	3.456295e-15	5.988722e-11	1.197744e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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