[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
457	7903171	NM_015485	RWDD3		RWD domain containing 3

Fetching correlation data, please wait...
Getting list of correlations for id 457.
Getting list of p-values for id 457.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.127 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7903171	8039068	NM_021074	NDUFV2	0.707741	3.143031e-17	5.445929e-13	5.445929e-13
2	7903171	8160033	NM_003094	SNRPE	0.707661	3.180425e-17	5.510722e-13	2.755361e-13
3	7903171	7970546	NM_152726	EFHA1	0.706049	4.029812e-17	6.982456e-13	2.327485e-13
4	7903171	8020058	NM_021074	NDUFV2	0.702352	6.894615e-17	1.194630e-12	2.986575e-13
5	7903171	7965855	NM_024057	NUP37	0.700295	9.261930e-17	1.604815e-12	3.209629e-13
6	7903171	8105504	NM_152789	FAM133B	0.697055	1.467337e-16	2.542454e-12	4.237424e-13
7	7903171	8025998	NM_003437	ZNF136	0.694454	2.113298e-16	3.661711e-12	5.231016e-13
8	7903171	7927786	NM_001001330	REEP3	0.690166	3.824358e-16	6.626464e-12	8.283080e-13
9	7903171	8147883	NM_020189	ENY2	0.689609	4.127737e-16	7.152129e-12	7.946810e-13
10	7903171	8111129	NM_033414	ZNF622	0.688867	4.568044e-16	7.915051e-12	7.915051e-13
11	7903171	7974603	NM_002788	PSMA3	0.688593	4.741956e-16	8.216388e-12	7.469443e-13
12	7903171	7943580	NM_003478	CUL5	0.684807	7.913080e-16	1.371099e-11	1.142583e-12
13	7903171	8150870	NM_002806	PSMC6	0.684758	7.965341e-16	1.380155e-11	1.061657e-12
14	7903171	8140942	NM_001040057	FAM133B	0.684647	8.085281e-16	1.400937e-11	1.000669e-12
15	7903171	8109802	NM_002887	RARS	0.682758	1.040635e-15	1.803109e-11	1.202072e-12
16	7903171	8046848	NM_018471	ZC3H15	0.681291	1.264411e-15	2.190845e-11	1.369278e-12
17	7903171	8046997	NM_019048	ASNSD1	0.678346	1.863093e-15	3.228181e-11	1.898930e-12
18	7903171	8081069	NM_018293	ZNF654	0.677313	2.132134e-15	3.694349e-11	2.052416e-12
19	7903171	8044766	NM_016133	INSIG2	0.674630	3.019034e-15	5.231081e-11	2.753200e-12
20	7903171	7956795	NM_013254	TBK1	0.670821	4.915841e-15	8.517677e-11	4.258839e-12
21	7903171	8135235	NM_004279	PMPCB	0.670192	5.324398e-15	9.225584e-11	4.393135e-12
22	7903171	7971550	NM_014166	MED4	0.669565	5.764333e-15	9.987859e-11	4.539936e-12
23	7903171	8131479	NM_019005	MIOS	0.669274	5.980057e-15	1.036165e-10	4.505063e-12
24	7903171	7962013	NM_016570	ERGIC2	0.666198	8.799133e-15	1.524626e-10	6.352608e-12
25	7903171	7980923	NM_004239	TRIP11	0.665868	9.168119e-15	1.588560e-10	6.354240e-12
26	7903171	8096463	NM_001128429	SMARCAD1	0.663527	1.225895e-14	2.124109e-10	8.169649e-12
27	7903171	7923007	NM_015984	UCHL5	0.662868	1.329734e-14	2.304030e-10	8.533445e-12
28	7903171	8085660	NM_206831	DPH3	0.662472	1.396271e-14	2.419318e-10	8.640421e-12
29	7903171	8112388	NM_001656	TRIM23	0.662035	1.473402e-14	2.552963e-10	8.803321e-12
30	7903171	8161242	NM_016042	EXOSC3	0.661683	1.538361e-14	2.665518e-10	8.885059e-12
31	7903171	8134122	NM_005751	AKAP9	0.660827	1.708388e-14	2.960124e-10	9.548788e-12
32	7903171	8146243	NM_032410	HOOK3	0.660674	1.740714e-14	3.016135e-10	9.425422e-12
33	7903171	8135688	NM_016200	NAA38	0.659827	1.930139e-14	3.344352e-10	1.013440e-11
34	7903171	7927799	ENST00000298249		0.659793	1.938277e-14	3.358452e-10	9.877799e-12
35	7903171	8055978	NM_152789	FAM133B	0.659410	2.030677e-14	3.518554e-10	1.005301e-11
36	7903171	8023735	NM_019022	TMX3	0.659263	2.067318e-14	3.582042e-10	9.950117e-12
37	7903171	8022009	NM_022840	METTL4	0.658626	2.233612e-14	3.870179e-10	1.045994e-11
38	7903171	8081256	NM_018309	TBC1D23	0.657096	2.687545e-14	4.656708e-10	1.225450e-11
39	7903171	8067295	NM_016045	SLMO2	0.657080	2.692592e-14	4.665454e-10	1.196270e-11
40	7903171	7938448	NM_017944	USP47	0.656383	2.928242e-14	5.073764e-10	1.268441e-11
41	7903171	7942914	NM_152991	EED	0.656007	3.063734e-14	5.308531e-10	1.294764e-11
42	7903171	8136631	NM_003143	SSBP1	0.655451	3.275141e-14	5.674836e-10	1.351152e-11
43	7903171	7918911	ENST00000319092		0.654744	3.564313e-14	6.175886e-10	1.436253e-11
44	7903171	8008530	NM_016001	UTP18	0.654590	3.630167e-14	6.289990e-10	1.429543e-11
45	7903171	7929562	NM_014803	ZNF518A	0.654526	3.657980e-14	6.338182e-10	1.408485e-11
46	7903171	7962590	NM_024604	RPAP3	0.654024	3.884024e-14	6.729848e-10	1.463010e-11
47	7903171	7975224	NM_004094	EIF2S1	0.653351	4.207706e-14	7.290693e-10	1.551211e-11
48	7903171	8162696	NR_027302	XPA	0.653114	4.328196e-14	7.499465e-10	1.562388e-11
49	7903171	8098985	NM_024511	HAUS3	0.652277	4.779860e-14	8.282064e-10	1.690217e-11
50	7903171	7947221	NM_018362	LIN7C	0.652275	4.780791e-14	8.283676e-10	1.656735e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation