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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
925 8103254 NM_003013 SFRP2 link to infopage secreted frizzled-related protein 2

Fetching correlation data, please wait...
Getting list of correlations for id 925.
Getting list of p-values for id 925.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.140 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8103254 7915543 NM_201649 SLC6A9 link to infopage 0.750421 3.119522e-20 5.405195e-16 5.405195e-16
2 8103254 8026954 NM_005027 PIK3R2 link to infopage 0.739857 1.958202e-19 3.392976e-15 1.696488e-15
3 8103254 8153652 NM_030974 SHARPIN link to infopage 0.738901 2.302200e-19 3.989022e-15 1.329674e-15
4 8103254 8150439 NM_020476 ANK1 link to infopage 0.727256 1.564664e-18 2.711093e-14 6.777733e-15
5 8103254 8011131 NM_031430 RILP link to infopage 0.722750 3.199627e-18 5.543994e-14 1.108799e-14
6 8103254 8016590 NM_030802 FAM117A link to infopage 0.721374 3.969496e-18 6.877945e-14 1.146324e-14
7 8103254 8013509 NM_152914 C17orf103 link to infopage 0.720987 4.216885e-18 7.306597e-14 1.043800e-14
8 8103254 8034108 NM_024029 YIPF2 link to infopage 0.719525 5.293324e-18 9.171742e-14 1.146468e-14
9 8103254 8026139 NM_002501 NFIX link to infopage 0.718397 6.302056e-18 1.091957e-13 1.213286e-14
10 8103254 7910372 NM_001010858 RNF187 link to infopage 0.703472 5.864609e-17 1.016161e-12 1.016161e-13
11 8103254 8072382 NM_030758 OSBP2 link to infopage 0.702996 6.282957e-17 1.088648e-12 9.896799e-14
12 8103254 8025766 NM_199141 CARM1 link to infopage 0.701387 7.920724e-17 1.372424e-12 1.143687e-13
13 8103254 8004545 NM_001678 ATP1B2 link to infopage 0.701326 7.991249e-17 1.384644e-12 1.065111e-13
14 8103254 8002087 NM_020850 RANBP10 link to infopage 0.695880 1.730951e-16 2.999218e-12 2.142299e-13
15 8103254 8048523 NM_006736 DNAJB2 link to infopage 0.693432 2.436564e-16 4.221835e-12 2.814557e-13
16 8103254 8001082 NM_005629 SLC6A8 link to infopage 0.692054 2.949118e-16 5.109937e-12 3.193710e-13
17 8103254 7995292 NM_005629 SLC6A8 link to infopage 0.690611 3.598183e-16 6.234571e-12 3.667395e-13
18 8103254 8034578 NM_006563 KLF1 link to infopage 0.686018 6.723828e-16 1.165038e-11 6.472431e-13
19 8103254 8035297 NM_031310 PLVAP link to infopage 0.680296 1.442061e-15 2.498659e-11 1.315084e-12
20 8103254 7935865 NM_013274 POLL link to infopage 0.679575 1.585769e-15 2.747662e-11 1.373831e-12
21 8103254 7992646 NM_001694 ATP6V0C link to infopage 0.679513 1.598549e-15 2.769806e-11 1.318955e-12
22 8103254 8058869 NM_022648 TNS1 link to infopage 0.679097 1.688394e-15 2.925480e-11 1.329763e-12
23 8103254 8016018 NM_001143780 SLC25A39 link to infopage 0.679021 1.705329e-15 2.954824e-11 1.284706e-12
24 8103254 8002262 ENST00000363109 link to infopage 0.677205 2.162204e-15 3.746451e-11 1.561021e-12
25 8103254 7897280 NM_001024598 HES3 link to infopage 0.676686 2.313379e-15 4.008392e-11 1.603357e-12
26 8103254 8091485 NM_005067 SIAH2 link to infopage 0.675184 2.810485e-15 4.869727e-11 1.872972e-12
27 8103254 8023968 NM_004359 CDC34 link to infopage 0.673598 3.447871e-15 5.974126e-11 2.212639e-12
28 8103254 8003298 NM_003486 SLC7A5 link to infopage 0.673568 3.460825e-15 5.996572e-11 2.141633e-12
29 8103254 8063583 NM_017495 RBM38 link to infopage 0.670997 4.806974e-15 8.329043e-11 2.872084e-12
30 8103254 8073705 NM_181333 PRR5 link to infopage 0.670718 4.980284e-15 8.629337e-11 2.876446e-12
31 8103254 8039409 NM_173804 TMEM86B link to infopage 0.670332 5.230393e-15 9.062701e-11 2.923452e-12
32 8103254 7942697 NM_004055 CAPN5 link to infopage 0.670106 5.382349e-15 9.325996e-11 2.914374e-12
33 8103254 8161824 NM_017998 C9orf40 link to infopage 0.669620 5.723807e-15 9.917641e-11 3.005346e-12
34 8103254 8170662 NM_005629 SLC6A8 link to infopage 0.669498 5.813029e-15 1.007223e-10 2.962422e-12
35 8103254 7981377 NM_152326 ANKRD9 link to infopage 0.667420 7.551403e-15 1.308432e-10 3.738376e-12
36 8103254 8075390 NM_174977 SEC14L4 link to infopage 0.666806 8.154706e-15 1.412966e-10 3.924905e-12
37 8103254 8167360 NM_002049 GATA1 link to infopage 0.662373 1.413350e-14 2.448912e-10 6.618681e-12
38 8103254 8166723 NM_021083 XK link to infopage 0.658616 2.236144e-14 3.874567e-10 1.019623e-11
39 8103254 7937485 NM_020376 PNPLA2 link to infopage 0.657445 2.576795e-14 4.464813e-10 1.144824e-11
40 8103254 7984983 ENST00000411240 link to infopage 0.657309 2.619462e-14 4.538741e-10 1.134685e-11
41 8103254 7990307 ENST00000411240 link to infopage 0.657309 2.619462e-14 4.538741e-10 1.107010e-11
42 8103254 7984684 ENST00000411240 link to infopage 0.657309 2.619462e-14 4.538741e-10 1.080653e-11
43 8103254 7984987 ENST00000411240 link to infopage 0.657309 2.619462e-14 4.538741e-10 1.055521e-11
44 8103254 8098721 ENST00000362702 link to infopage 0.656231 2.982270e-14 5.167379e-10 1.174404e-11
45 8103254 7913644 NM_004091 E2F2 link to infopage 0.655534 3.242609e-14 5.618468e-10 1.248548e-11
46 8103254 7983290 NM_001018108 SERF2 link to infopage 0.654892 3.501771e-14 6.067518e-10 1.319026e-11
47 8103254 8145005 NM_001978 EPB49 link to infopage 0.654839 3.524106e-14 6.106219e-10 1.299196e-11
48 8103254 7991772 NM_005331 HBQ1 link to infopage 0.654837 3.524766e-14 6.107362e-10 1.272367e-11
49 8103254 8040522 NM_001080473 MFSD2B link to infopage 0.653721 4.026663e-14 6.976999e-10 1.423877e-11
50 8103254 8024204 NM_000455 STK11 link to infopage 0.653575 4.097322e-14 7.099430e-10 1.419886e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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