[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5680	8032037	NM_012435	SHC2		SHC (Src homology 2 domain containing) transforming protein 2

Fetching correlation data, please wait...
Getting list of correlations for id 5680.
Getting list of p-values for id 5680.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.125 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8032037	8033462	NM_206833	CTXN1	0.800974	1.099272e-24	1.904708e-20	1.904708e-20
2	8032037	8005328	NM_016239	MYO15A	0.800401	1.254838e-24	2.174258e-20	1.087129e-20
3	8032037	8067409	NM_005560	LAMA5	0.799962	1.388299e-24	2.405506e-20	8.018354e-21
4	8032037	8064242	NR_027686	NCRNA00176	0.797857	2.246623e-24	3.892723e-20	9.731807e-21
5	8032037	8001449	NM_024336	IRX3	0.797481	2.446810e-24	4.239588e-20	8.479176e-21
6	8032037	7955184	NM_006262	PRPH	0.791826	8.651840e-24	1.499104e-19	2.498507e-20
7	8032037	7934544	NM_144589	COMTD1	0.790894	1.061486e-23	1.839236e-19	2.627480e-20
8	8032037	8138670	NM_031243	HNRNPA2B1	-0.787886	2.038693e-23	3.532443e-19	4.415553e-20
9	8032037	7942123	NM_053056	CCND1	0.787750	2.099013e-23	3.636959e-19	4.041066e-20
10	8032037	7945162	NM_003658	BARX2	0.787482	2.223772e-23	3.853130e-19	3.853130e-20
11	8032037	7977418	NM_001134875	C14orf80	0.785237	3.590775e-23	6.221735e-19	5.656123e-20
12	8032037	7896985	NM_080875	MIB2	0.784573	4.132827e-23	7.160950e-19	5.967458e-20
13	8032037	7942717	NM_000260	MYO7A	0.782842	5.950168e-23	1.030986e-18	7.930659e-20
14	8032037	7945550	NM_018494	LRDD	0.781561	7.774596e-23	1.347104e-18	9.622174e-20
15	8032037	8133704	NM_001110199	SRRM3	0.781408	8.025677e-23	1.390609e-18	9.270727e-20
16	8032037	8030015	NM_012451	SYNGR4	0.780233	1.023839e-22	1.774006e-18	1.108754e-19
17	8032037	8078305	NM_052953	LRRC3B	0.777226	1.896887e-22	3.286736e-18	1.933374e-19
18	8032037	8037563	NM_006663	PPP1R13L	0.776727	2.099095e-22	3.637102e-18	2.020612e-19
19	8032037	8079021	NM_001904	CTNNB1	-0.776652	2.131355e-22	3.692999e-18	1.943684e-19
20	8032037	8039524	NM_152600	ZNF579	0.775275	2.815538e-22	4.878482e-18	2.439241e-19
21	8032037	8143941	NM_198285	WDR86	0.773156	4.303890e-22	7.457351e-18	3.551119e-19
22	8032037	8113981	NM_004199	P4HA2	0.772141	5.265627e-22	9.123752e-18	4.147160e-19
23	8032037	8159142	NM_000093	COL5A1	0.770542	7.219876e-22	1.250988e-17	5.439078e-19
24	8032037	7917156	NM_003902	FUBP1	-0.769982	8.060236e-22	1.396597e-17	5.819155e-19
25	8032037	8114550	NM_004883	NRG2	0.769568	8.740340e-22	1.514439e-17	6.057755e-19
26	8032037	8035539	NM_001492	GDF1	0.768924	9.912434e-22	1.717527e-17	6.605875e-19
27	8032037	8016168	NM_133373	PLCD3	0.768230	1.134695e-21	1.966086e-17	7.281801e-19
28	8032037	8003635	NM_172367	TUSC5	0.768026	1.180460e-21	2.045384e-17	7.304942e-19
29	8032037	8052024	NM_025133	FBXO11	-0.767829	1.226468e-21	2.125101e-17	7.327933e-19
30	8032037	7929840	NM_003987	PAX2	0.767661	1.267122e-21	2.195542e-17	7.318472e-19
31	8032037	8023984	NM_001194	HCN2	0.766715	1.521302e-21	2.635961e-17	8.503099e-19
32	8032037	8000467	NM_001109763	GSG1L	0.766306	1.646004e-21	2.852030e-17	8.912595e-19
33	8032037	7940022	NM_178570	RTN4RL2	0.766031	1.735451e-21	3.007016e-17	9.112168e-19
34	8032037	8100714	NM_001031732	YTHDC1	-0.765822	1.806694e-21	3.130458e-17	9.207231e-19
35	8032037	7937560	NM_002457	MUC2	0.764921	2.147124e-21	3.720322e-17	1.062949e-18
36	8032037	8153876	NM_025251	ARHGAP39	0.764721	2.230562e-21	3.864894e-17	1.073582e-18
37	8032037	8116579	NM_033260	FOXQ1	0.763670	2.725104e-21	4.721787e-17	1.276159e-18
38	8032037	7936826	NM_022466	IKZF5	-0.763540	2.792856e-21	4.839181e-17	1.273469e-18
39	8032037	8082289	NM_152889	CHST13	0.762467	3.422444e-21	5.930068e-17	1.520530e-18
40	8032037	8010583	NR_027255	LOC388428	0.762132	3.645543e-21	6.316633e-17	1.579158e-18
41	8032037	8093826	NM_000683	ADRA2C	0.761989	3.745239e-21	6.489376e-17	1.582775e-18
42	8032037	7995310	ENST00000319817		0.761566	4.055675e-21	7.027268e-17	1.673159e-18
43	8032037	7937443	NM_022772	EPS8L2	0.761440	4.152955e-21	7.195825e-17	1.673448e-18
44	8032037	7936762	NM_001001976	ATE1	-0.761054	4.465220e-21	7.736887e-17	1.758383e-18
45	8032037	8067610	NM_000744	CHRNA4	0.761047	4.470932e-21	7.746784e-17	1.721508e-18
46	8032037	8162472	NM_021570	BARX1	0.760319	5.123553e-21	8.877580e-17	1.929909e-18
47	8032037	8030448	NM_001136052	CPT1C	0.760318	5.124474e-21	8.879177e-17	1.889187e-18
48	8032037	8037788	NM_145056	DACT3	0.760139	5.298484e-21	9.180684e-17	1.912642e-18
49	8032037	7928189	NM_170744	UNC5B	0.760133	5.305409e-21	9.192682e-17	1.876058e-18
50	8032037	8060134	NM_004321	KIF1A	0.760049	5.388576e-21	9.336786e-17	1.867357e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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