[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2111	7963741	NM_014311	SMUG1		single-strand-selective monofunctional uracil-DNA glycosylase 1

Fetching correlation data, please wait...
Getting list of correlations for id 2111.
Getting list of p-values for id 2111.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.094 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7963741	7920600	NM_183001	SHC1	0.433010	3.958650e-6	6.859153e-2	6.859153e-2
2	7963741	8029065	NM_000709	BCKDHA	0.432024	4.186990e-6	7.254798e-2	3.627399e-2
3	7963741	8034055	NM_023008	KRI1	0.429961	4.706153e-6	8.154352e-2	2.718117e-2
4	7963741	8173428	ENST00000391303		-0.422317	7.208133e-6	1.248953e-1	3.122383e-2
5	7963741	8115865	NM_138369	BOD1	0.420652	7.898622e-6	1.368594e-1	2.737188e-2
6	7963741	8131101	NM_198949	NUDT1	0.415530	1.043468e-5	1.808018e-1	3.013363e-2
7	7963741	7999754	NM_022166	XYLT1	-0.410607	1.357877e-5	2.352794e-1	3.361134e-2
8	7963741	7956737	hsa-let-7i		-0.409966	1.404820e-5	2.434131e-1	3.042664e-2
9	7963741	8108376	ENST00000459407		-0.404554	1.866525e-5	3.234127e-1	3.593475e-2
10	7963741	7948303	ENST00000319748		-0.404086	1.912561e-5	3.313895e-1	3.313895e-2
11	7963741	7995320			0.403099	2.013075e-5	3.488055e-1	3.170959e-2
12	7963741	8148841	NM_024531	GPR172A	0.395374	2.989212e-5	5.179408e-1	4.316173e-2
13	7963741	7954434	ENST00000410223		0.394474	3.128113e-5	5.420082e-1	4.169294e-2
14	7963741	8132849	ENST00000459440		-0.388862	4.140292e-5	7.173884e-1	5.124203e-2
15	7963741	7920382	NM_181715	CRTC2	0.387211	4.491881e-5	7.783083e-1	5.188722e-2
16	7963741	8041820	NM_014011	SOCS5	-0.383633	5.351654e-5	9.272810e-1	5.795506e-2
17	7963741	8000632			0.381412	5.960268e-5	1.032736e+0	6.074916e-2
18	7963741	7947989	ENST00000363220		-0.380588	6.202166e-5	1.074649e+0	5.970274e-2
19	7963741	8135967			-0.379777	6.448992e-5	1.117417e+0	5.881141e-2
20	7963741	8150960	ENST00000459488		-0.376719	7.464539e-5	1.293381e+0	6.466904e-2
21	7963741	8167815	NM_014599	MAGED2	0.373477	8.703070e-5	1.507981e+0	7.180862e-2
22	7963741	8171336	ENST00000411014		-0.370693	9.916328e-5	1.718202e+0	7.810010e-2
23	7963741	8048505	NR_026909	STK16	0.369669	1.040050e-4	1.802095e+0	7.835194e-2
24	7963741	7995328			0.366624	1.197456e-4	2.074832e+0	8.645131e-2
25	7963741	8170247	AK093505	CXorf18	0.366361	1.212075e-4	2.100163e+0	8.400650e-2
26	7963741	8089677	GENSCAN00000037139		0.364250	1.335237e-4	2.313565e+0	8.898325e-2
27	7963741	7928547			0.364218	1.337197e-4	2.316961e+0	8.581338e-2
28	7963741	8087409	NM_001664	RHOA	-0.359702	1.641108e-4	2.843548e+0	1.015553e-1
29	7963741	8055139	AK056598	LOC151121	-0.356405	1.902207e-4	3.295954e+0	1.136536e-1
30	7963741	8094144	NM_030930	UNC93B1	0.355485	1.981599e-4	3.433516e+0	1.144505e-1
31	7963741	8066567	ENST00000447334		0.354838	2.039252e-4	3.533411e+0	1.139810e-1
32	7963741	8154635	NM_002451	MTAP	-0.354702	2.051570e-4	3.554755e+0	1.110861e-1
33	7963741	8052370	ENST00000365474		0.354595	2.061324e-4	3.571656e+0	1.082320e-1
34	7963741	8124183	ENST00000410499		0.353307	2.181975e-4	3.780708e+0	1.111973e-1
35	7963741	8155455	AK126863	NCRNA00268	-0.353070	2.204907e-4	3.820443e+0	1.091555e-1
36	7963741	7960896	NM_001040071	LOC650293	-0.352997	2.212019e-4	3.832765e+0	1.064657e-1
37	7963741	8025612	NM_022377	ICAM4	0.351960	2.315223e-4	4.011587e+0	1.084213e-1
38	7963741	8070295	ENST00000459411		-0.349149	2.617652e-4	4.535606e+0	1.193581e-1
39	7963741	8155169	NM_021111	RECK	-0.348687	2.670747e-4	4.627603e+0	1.186565e-1
40	7963741	8072328	NM_012429	SEC14L2	-0.348296	2.716431e-4	4.706761e+0	1.176690e-1
41	7963741	7924893	ENST00000436555		0.347553	2.805235e-4	4.860631e+0	1.185520e-1
42	7963741	8092457	NM_005787	ALG3	-0.346049	2.993200e-4	5.186317e+0	1.234837e-1
43	7963741	8062016	NM_014183	DYNLRB1	-0.342861	3.430910e-4	5.944738e+0	1.382497e-1
44	7963741	8100782			0.342408	3.497575e-4	6.060248e+0	1.377329e-1
45	7963741	8078260	ENST00000384001		-0.341034	3.707549e-4	6.424069e+0	1.427571e-1
46	7963741	7965471	NM_003348	UBE2N	-0.340187	3.842516e-4	6.657927e+0	1.447375e-1
47	7963741	8131860	BC012331	C7orf30	-0.336747	4.439218e-4	7.691834e+0	1.636560e-1
48	7963741	8113881	NM_016340	RAPGEF6	-0.334923	4.789018e-4	8.297931e+0	1.728736e-1
49	7963741	8135229	NM_031905	ARMC10	-0.332672	5.255580e-4	9.106343e+0	1.858437e-1
50	7963741	7963137			-0.332480	5.297253e-4	9.178550e+0	1.835710e-1

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation