[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
12046	7998664	NR_002327	SNORA10		small nucleolar RNA, H/ACA box 10
12047	8041204	NR_002327	SNORA10		small nucleolar RNA, H/ACA box 10

Fetching correlation data, please wait...
Getting list of correlations for id 12046.
Getting list of p-values for id 12046.
1 of 2 done.
Getting list of correlations for id 12047.
Getting list of p-values for id 12047.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.209 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7998664	8041204	NR_002327	SNORA10	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8041204	7998664	NR_002327	SNORA10	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	7998664	7949015	NM_001144936	C11orf95	0.762743	3.248285e-21	1.125661e-16	3.752202e-17
4	8041204	7949015	NM_001144936	C11orf95	0.762743	3.248285e-21	1.125661e-16	2.814152e-17
5	7998664	8039273	NM_145057	CDC42EP5	0.747139	5.573794e-20	1.931542e-15	3.863085e-16
6	8041204	8039273	NM_145057	CDC42EP5	0.747139	5.573794e-20	1.931542e-15	3.219237e-16
7	7998664	7976182	NM_022054	KCNK13	0.747025	5.685729e-20	1.970332e-15	2.814761e-16
8	8041204	7976182	NM_022054	KCNK13	0.747025	5.685729e-20	1.970332e-15	2.462915e-16
9	7998664	8152096	NM_145690	YWHAZ	-0.744777	8.416513e-20	2.916658e-15	3.240731e-16
10	8041204	8152096	NM_145690	YWHAZ	-0.744777	8.416513e-20	2.916658e-15	2.916658e-16
11	8041204	7966851	NM_016281	TAOK3	-0.730836	8.773929e-19	3.040517e-14	2.764107e-15
12	7998664	7966851	NM_016281	TAOK3	-0.730836	8.773929e-19	3.040517e-14	2.533764e-15
13	7998664	8059014	NM_017521	FEV	0.729783	1.041101e-18	3.607831e-14	2.775255e-15
14	8041204	8059014	NM_017521	FEV	0.729783	1.041101e-18	3.607831e-14	2.577022e-15
15	8041204	7992269	ENST00000301714		0.729603	1.071987e-18	3.714865e-14	2.476577e-15
16	7998664	7992269	ENST00000301714		0.729603	1.071987e-18	3.714865e-14	2.321791e-15
17	7998664	7971197	NM_172373	ELF1	-0.727694	1.458559e-18	5.054490e-14	2.973229e-15
18	8041204	7971197	NM_172373	ELF1	-0.727694	1.458559e-18	5.054490e-14	2.808050e-15
19	7998664	7962085	NM_006390	IPO8	-0.726046	1.898843e-18	6.580252e-14	3.463291e-15
20	8041204	7962085	NM_006390	IPO8	-0.726046	1.898843e-18	6.580252e-14	3.290126e-15
21	8041204	8056977	NM_006164	NFE2L2	-0.722638	3.256254e-18	1.128422e-13	5.373440e-15
22	7998664	8056977	NM_006164	NFE2L2	-0.722638	3.256254e-18	1.128422e-13	5.129192e-15
23	7998664	7962499	NM_004719	SRSF2IP	-0.722195	3.490917e-18	1.209742e-13	5.259749e-15
24	8041204	7962499	NM_004719	SRSF2IP	-0.722195	3.490917e-18	1.209742e-13	5.040593e-15
25	8041204	8039759	NM_198458	ZNF497	0.721326	3.999818e-18	1.386097e-13	5.544387e-15
26	7998664	8039759	NM_198458	ZNF497	0.721326	3.999818e-18	1.386097e-13	5.331142e-15
27	7998664	7909931	NM_144695	C1orf58	-0.720144	4.808590e-18	1.666369e-13	6.171736e-15
28	8041204	7909931	NM_144695	C1orf58	-0.720144	4.808590e-18	1.666369e-13	5.951317e-15
29	7998664	7979412			-0.720040	4.887057e-18	1.693561e-13	5.839865e-15
30	8041204	7979412			-0.720040	4.887057e-18	1.693561e-13	5.645203e-15
31	8041204	8133704	NM_001110199	SRRM3	0.718829	5.895052e-18	2.042871e-13	6.589907e-15
32	7998664	8133704	NM_001110199	SRRM3	0.718829	5.895052e-18	2.042871e-13	6.383973e-15
33	8041204	7981447	NM_001100119	XRCC3	0.717704	7.011844e-18	2.429885e-13	7.363286e-15
34	7998664	7981447	NM_001100119	XRCC3	0.717704	7.011844e-18	2.429885e-13	7.146719e-15
35	8041204	8083094	NM_006506	RASA2	-0.717080	7.717306e-18	2.674355e-13	7.641015e-15
36	7998664	8083094	NM_006506	RASA2	-0.717080	7.717306e-18	2.674355e-13	7.428765e-15
37	8041204	8075126	NM_002430	MN1	0.717053	7.749557e-18	2.685532e-13	7.258194e-15
38	7998664	8075126	NM_002430	MN1	0.717053	7.749557e-18	2.685532e-13	7.067188e-15
39	8041204	7968265	NM_000209	PDX1	0.716171	8.869687e-18	3.073701e-13	7.881285e-15
40	7998664	7968265	NM_000209	PDX1	0.716171	8.869687e-18	3.073701e-13	7.684253e-15
41	7998664	8027213	NM_198537	YJEFN3	0.715928	9.205163e-18	3.189957e-13	7.780383e-15
42	8041204	8027213	NM_198537	YJEFN3	0.715928	9.205163e-18	3.189957e-13	7.595136e-15
43	7998664	8029950	NM_014601	EHD2	0.715845	9.322247e-18	3.230531e-13	7.512864e-15
44	8041204	8029950	NM_014601	EHD2	0.715845	9.322247e-18	3.230531e-13	7.342117e-15
45	8041204	8075200	NM_012265	RHBDD3	0.715843	9.324261e-18	3.231229e-13	7.180510e-15
46	7998664	8075200	NM_012265	RHBDD3	0.715843	9.324261e-18	3.231229e-13	7.024412e-15
47	7998664	8164701	NM_015046	SETX	-0.715734	9.481464e-18	3.285707e-13	6.990865e-15
48	8041204	8164701	NM_015046	SETX	-0.715734	9.481464e-18	3.285707e-13	6.845222e-15
49	8041204	8064676	NM_145762	GFRA4	0.715337	1.007311e-17	3.490737e-13	7.123953e-15
50	7998664	8064676	NM_145762	GFRA4	0.715337	1.007311e-17	3.490737e-13	6.981474e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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