[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6523	8039378	NM_003180	SYT5		synaptotagmin V

Fetching correlation data, please wait...
Getting list of correlations for id 6523.
Getting list of p-values for id 6523.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.121 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8039378	8153346	NM_023946	LYNX1	0.793269	6.292441e-24	1.090291e-19	1.090291e-19
2	8039378	8110382	NM_030567	PRR7	0.792338	7.729327e-24	1.339260e-19	6.696302e-20
3	8039378	7970241	NM_000504	F10	0.791663	8.967949e-24	1.553877e-19	5.179589e-20
4	8039378	8112072	NM_021147	CCNO	0.790879	1.064851e-23	1.845067e-19	4.612667e-20
5	8039378	8008372	NM_017957	EPN3	0.780467	9.754551e-23	1.690171e-18	3.380342e-19
6	8039378	7896865	NM_153254	TTLL10	0.772438	4.964687e-22	8.602313e-18	1.433719e-18
7	8039378	7918416	NM_006492	ALX3	0.767412	1.329679e-21	2.303935e-17	3.291336e-18
8	8039378	7955184	NM_006262	PRPH	0.767090	1.415042e-21	2.451844e-17	3.064805e-18
9	8039378	7937560	NM_002457	MUC2	0.766581	1.561068e-21	2.704862e-17	3.005403e-18
10	8039378	8028719	NM_016941	DLL3	0.763673	2.723577e-21	4.719143e-17	4.719143e-18
11	8039378	7935983	NM_005029	PITX3	0.763518	2.804766e-21	4.859819e-17	4.418017e-18
12	8039378	7940022	NM_178570	RTN4RL2	0.760273	5.167721e-21	8.954111e-17	7.461759e-18
13	8039378	7911941	NM_015557	CHD5	0.759290	6.206694e-21	1.075434e-16	8.272568e-18
14	8039378	8018220	NM_000835	GRIN2C	0.757783	8.206179e-21	1.421885e-16	1.015632e-17
15	8039378	7983663	NM_005154	USP8	-0.757157	9.209888e-21	1.595797e-16	1.063865e-17
16	8039378	8174469	NM_012282	KCNE1L	0.755199	1.318255e-20	2.284140e-16	1.427587e-17
17	8039378	8087116	NM_001008269	TMEM89	0.755066	1.350763e-20	2.340468e-16	1.376746e-17
18	8039378	8065580	NM_080611	DUSP15	0.754927	1.385348e-20	2.400392e-16	1.333551e-17
19	8039378	7998444	ENST00000440800		0.754076	1.616856e-20	2.801527e-16	1.474488e-17
20	8039378	8023984	NM_001194	HCN2	0.753739	1.718759e-20	2.978093e-16	1.489047e-17
21	8039378	8037563	NM_006663	PPP1R13L	0.753717	1.725632e-20	2.990003e-16	1.423811e-17
22	8039378	7992845	NM_003456	ZNF205	0.753041	1.949989e-20	3.378747e-16	1.535794e-17
23	8039378	7952893	BC024764	IQSEC3	0.751908	2.390765e-20	4.142478e-16	1.801077e-17
24	8039378	8100902	NM_032217	ANKRD17	-0.751145	2.741134e-20	4.749564e-16	1.978985e-17
25	8039378	7920744	NM_000298	PKLR	0.749255	3.837736e-20	6.649646e-16	2.659858e-17
26	8039378	7977888	NM_022478	CDH24	0.746964	5.746953e-20	9.957745e-16	3.829902e-17
27	8039378	8004842	NM_173728	ARHGEF15	0.746752	5.964525e-20	1.033473e-15	3.827678e-17
28	8039378	8033462	NM_206833	CTXN1	0.746480	6.255231e-20	1.083844e-15	3.870871e-17
29	8039378	8004372	NM_003985	TNK1	0.746127	6.653669e-20	1.152881e-15	3.975452e-17
30	8039378	8035539	NM_001492	GDF1	0.746037	6.759054e-20	1.171141e-15	3.903804e-17
31	8039378	7914667	NM_052896	CSMD2	0.744968	8.142663e-20	1.410879e-15	4.551223e-17
32	8039378	7945550	NM_018494	LRDD	0.744905	8.232023e-20	1.426363e-15	4.457383e-17
33	8039378	8090639	NM_014602	PIK3R4	-0.744207	9.290449e-20	1.609756e-15	4.878049e-17
34	8039378	8025053	NM_003811	TNFSF9	0.743712	1.012084e-19	1.753638e-15	5.157758e-17
35	8039378	7992147	NM_021098	CACNA1H	0.743526	1.045244e-19	1.811095e-15	5.174557e-17
36	8039378	7992460	NM_001099456	NPW	0.743479	1.053592e-19	1.825558e-15	5.070995e-17
37	8039378	8118990	NM_207409	C6orf126	0.743253	1.095534e-19	1.898231e-15	5.130354e-17
38	8039378	8114550	NM_004883	NRG2	0.743072	1.130190e-19	1.958281e-15	5.153370e-17
39	8039378	7979876	ENST00000413777		0.742550	1.236473e-19	2.142436e-15	5.493426e-17
40	8039378	8109403	NR_024152	MFAP3	-0.742070	1.342466e-19	2.326091e-15	5.815229e-17
41	8039378	8156415	NM_006648	WNK2	0.741833	1.398148e-19	2.422571e-15	5.908710e-17
42	8039378	8038299	NM_033142	CGB7	0.741628	1.448014e-19	2.508974e-15	5.973748e-17
43	8039378	7923360	NM_003281	TNNI1	0.741178	1.563943e-19	2.709844e-15	6.301963e-17
44	8039378	8024605	NM_021938	CELF5	0.741063	1.594814e-19	2.763335e-15	6.280306e-17
45	8039378	7906307	NM_018240	KIRREL	0.739012	2.259350e-19	3.914776e-15	8.699502e-17
46	8039378	8093440	NM_001004356	FGFRL1	0.737873	2.737649e-19	4.743524e-15	1.031201e-16
47	8039378	7900792	NM_002840	PTPRF	0.737742	2.798665e-19	4.849246e-15	1.031754e-16
48	8039378	8033487	NM_032447	FBN3	0.737185	3.072886e-19	5.324390e-15	1.109248e-16
49	8039378	8003948	NM_001014985	GLTPD2	0.737139	3.096360e-19	5.365062e-15	1.094911e-16
50	8039378	8088485	NM_018008	FEZF2	0.736636	3.368757e-19	5.837046e-15	1.167409e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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