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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id Label1 AccNum GeneSym Info Gene Name
12005 8115978 NM_016290 UIMC1 link to infopage ubiquitin interaction motif containing 1
16055 7911343 AF284753 UIMC1 link to infopage ubiquitin interaction motif containing 1
16056 8165703 AF284753 UIMC1 link to infopage ubiquitin interaction motif containing 1

Fetching correlation data, please wait...
Getting list of correlations for id 12005.
Getting list of p-values for id 12005.
1 of 3 done.
Getting list of correlations for id 16055.
Getting list of p-values for id 16055.
2 of 3 done.
Getting list of correlations for id 16056.
Getting list of p-values for id 16056.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.322 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8165703 7911343 AF284753 UIMC1 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
2 7911343 8165703 AF284753 UIMC1 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
3 8115978 8147469 NM_016134 PGCP link to infopage 0.871941 1.017121e-33 5.287097e-29 1.762366e-29
4 8115978 7954436 NM_006152 LRMP link to infopage 0.871139 1.373458e-33 7.139370e-29 1.784843e-29
5 8115978 8016745 NM_001130528 SPAG9 link to infopage 0.867999 4.366841e-33 2.269927e-28 4.539855e-29
6 8115978 8047381 NM_003879 CFLAR link to infopage 0.867429 5.370164e-33 2.791465e-28 4.652441e-29
7 8115978 7929511 NM_001776 ENTPD1 link to infopage 0.862935 2.654832e-32 1.380008e-27 1.971441e-28
8 8115978 8038029 NM_014959 CARD8 link to infopage 0.860746 5.664696e-32 2.944565e-27 3.680707e-28
9 8115978 7936064 NM_012229 NT5C2 link to infopage 0.860634 5.886194e-32 3.059703e-27 3.399670e-28
10 8115978 7922773 NM_000433 NCF2 link to infopage 0.860598 5.960251e-32 3.098198e-27 3.098198e-28
11 8115978 7980005 NM_001005743 NUMB link to infopage 0.856320 2.522355e-31 1.311146e-26 1.191950e-27
12 8115978 7987048 NM_017762 MTMR10 link to infopage 0.854560 4.505894e-31 2.342209e-26 1.951840e-27
13 8115978 8064790 NM_014737 RASSF2 link to infopage 0.854147 5.158424e-31 2.681400e-26 2.062616e-27
14 8115978 8022251 NM_001042388 PPP4R1 link to infopage 0.854024 5.368737e-31 2.790723e-26 1.993374e-27
15 8115978 8085374 NM_002880 RAF1 link to infopage 0.853743 5.883854e-31 3.058486e-26 2.038991e-27
16 8115978 8007976 NM_006310 NPEPPS link to infopage 0.852804 7.979452e-31 4.147799e-26 2.592374e-27
17 8115978 7978595 NM_013448 BAZ1A link to infopage 0.852090 1.004529e-30 5.221643e-26 3.071555e-27
18 8115978 8135514 NM_001550 IFRD1 link to infopage 0.851616 1.169484e-30 6.079095e-26 3.377275e-27
19 8115978 8119529 NM_015255 UBR2 link to infopage 0.851292 1.297039e-30 6.742141e-26 3.548495e-27
20 8115978 8004867 NM_001025579 NDEL1 link to infopage 0.851047 1.402716e-30 7.291458e-26 3.645729e-27
21 8115978 8152845 BC017297 FAM49B link to infopage 0.850571 1.632225e-30 8.484471e-26 4.040224e-27
22 8115978 8065280 NM_020343 RALGAPA2 link to infopage 0.850018 1.945459e-30 1.011269e-25 4.596679e-27
23 8115978 8152976 NM_144649 TMEM71 link to infopage 0.849233 2.492967e-30 1.295869e-25 5.634214e-27
24 8115978 7978932 NM_006939 SOS2 link to infopage 0.847631 4.116934e-30 2.140023e-25 8.916764e-27
25 8115978 8008870 NM_030938 TMEM49 link to infopage 0.846765 5.385400e-30 2.799385e-25 1.119754e-26
26 8115978 8056060 NM_013450 BAZ2B link to infopage 0.846108 6.596020e-30 3.428677e-25 1.318722e-26
27 8115978 7930882 NM_207009 FAM45A link to infopage 0.845082 9.036025e-30 4.697016e-25 1.739636e-26
28 8115978 8140840 NM_024636 STEAP4 link to infopage 0.843793 1.337769e-29 6.953855e-25 2.483520e-26
29 8115978 8173766 NM_153252 BRWD3 link to infopage 0.843550 1.439779e-29 7.484113e-25 2.580729e-26
30 8115978 7950838 NM_007166 PICALM link to infopage 0.843550 1.439837e-29 7.484414e-25 2.494805e-26
31 8115978 8116372 NM_018434 RNF130 link to infopage 0.842371 2.053359e-29 1.067357e-24 3.443086e-26
32 8115978 8120943 NM_016230 CYB5R4 link to infopage 0.842285 2.107255e-29 1.095372e-24 3.423038e-26
33 8115978 8075239 NM_001002878 THOC5 link to infopage 0.839466 4.864292e-29 2.528508e-24 7.662145e-26
34 8115978 7928516 NM_144660 SAMD8 link to infopage 0.838714 6.065303e-29 3.152805e-24 9.272956e-26
35 8115978 7935403 NM_032900 ARHGAP19 link to infopage 0.838710 6.071334e-29 3.155940e-24 9.016972e-26
36 8115978 8162086 NM_015239 AGTPBP1 link to infopage 0.838391 6.664436e-29 3.464240e-24 9.622890e-26
37 8115978 7981111 NM_177438 DICER1 link to infopage 0.838295 6.854872e-29 3.563231e-24 9.630354e-26
38 8115978 7987192 NM_001042496 SLC12A6 link to infopage 0.837700 8.150699e-29 4.236815e-24 1.114951e-25
39 8115978 8045514 NM_001001664 SPOPL link to infopage 0.836935 1.017386e-28 5.288474e-24 1.356019e-25
40 8115978 7957570 NM_005761 PLXNC1 link to infopage 0.836931 1.018306e-28 5.293255e-24 1.323314e-25
41 8115978 8084541 NM_001009921 VPS8 link to infopage 0.836199 1.257661e-28 6.537448e-24 1.594499e-25
42 8115978 7989023 NM_004580 RAB27A link to infopage 0.835627 1.481975e-28 7.703456e-24 1.834156e-25
43 8115978 7946478 NM_015213 DENND5A link to infopage 0.835598 1.494168e-28 7.766835e-24 1.806241e-25
44 8115978 8145365 NM_024940 DOCK5 link to infopage 0.835575 1.504044e-28 7.818173e-24 1.776857e-25
45 8115978 7916077 NM_002525 NRD1 link to infopage 0.834969 1.788873e-28 9.298743e-24 2.066387e-25
46 8115978 8168472 NM_000052 ATP7A link to infopage 0.834516 2.034943e-28 1.057784e-23 2.299530e-25
47 8115978 8102006 NM_005908 MANBA link to infopage 0.833796 2.496221e-28 1.297561e-23 2.760768e-25
48 8115978 8054329 NM_173647 RNF149 link to infopage 0.832885 3.227243e-28 1.677553e-23 3.494902e-25
49 8115978 7954511 NM_015000 STK38L link to infopage 0.832445 3.652050e-28 1.898372e-23 3.874229e-25
50 8115978 8014650 NM_006310 NPEPPS link to infopage 0.831121 5.284815e-28 2.747100e-23 5.494200e-25

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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