[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6499	7979732	NM_006370	VTI1B		vesicle transport through interaction with t-SNAREs homolog 1B (yeast)

Fetching correlation data, please wait...
Getting list of correlations for id 6499.
Getting list of p-values for id 6499.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.129 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7979732	8108847	NM_183401	RNF14	0.783727	4.940979e-23	8.561234e-19	8.561234e-19
2	7979732	8049574	NM_080678	UBE2F	0.776211	2.330548e-22	4.038141e-18	2.019070e-18
3	7979732	7965343	NM_172240	POC1B	0.766192	1.682596e-21	2.915434e-17	9.718114e-18
4	7979732	7917148	NM_022831	AIDA	0.759395	6.087572e-21	1.054794e-16	2.636984e-17
5	7979732	8127158	NM_001498	GCLC	0.757916	8.007489e-21	1.387458e-16	2.774915e-17
6	7979732	7908867	NM_138391	TMEM183A	0.755548	1.237091e-20	2.143507e-16	3.572512e-17
7	7979732	8055261	NM_032144	RAB6C	0.742235	1.305184e-19	2.261492e-15	3.230702e-16
8	7979732	8128683	NM_003795	SNX3	0.724634	2.376513e-18	4.117784e-14	5.147230e-15
9	7979732	8085263	NM_018447	TMEM111	0.719928	4.972951e-18	8.616632e-14	9.574036e-15
10	7979732	8043310	NM_022780	RMND5A	0.716632	8.265403e-18	1.432146e-13	1.432146e-14
11	7979732	8083826	NM_003262	SEC62	0.713930	1.246998e-17	2.160673e-13	1.964248e-14
12	7979732	8039961	NR_024080	ACP1	0.712331	1.587043e-17	2.749869e-13	2.291557e-14
13	7979732	8155312	NM_024345	DCAF10	0.710540	2.075247e-17	3.595781e-13	2.765986e-14
14	7979732	7958414	NM_014301	ISCU	0.707388	3.310575e-17	5.736233e-13	4.097309e-14
15	7979732	8052721	NM_000945	PPP3R1	0.707380	3.314549e-17	5.743119e-13	3.828746e-14
16	7979732	8046685	NM_182678	UBE2E3	0.707243	3.382288e-17	5.860491e-13	3.662807e-14
17	7979732	7946439	NM_020644	TMEM9B	0.704616	4.967096e-17	8.606488e-13	5.062640e-14
18	7979732	8052149	NM_014614	PSME4	0.704524	5.034387e-17	8.723082e-13	4.846156e-14
19	7979732	8084345	NM_004068	AP2M1	0.702766	6.495280e-17	1.125437e-12	5.923354e-14
20	7979732	8091452	NM_001079809	TMEM183B	0.702561	6.689971e-17	1.159171e-12	5.795856e-14
21	7979732	7974781	NM_021003	PPM1A	0.702481	6.767240e-17	1.172560e-12	5.583618e-14
22	7979732	8013094	NM_003653	COPS3	0.700484	9.015198e-17	1.562063e-12	7.100288e-14
23	7979732	8060225	NM_203346	HDLBP	0.696407	1.607419e-16	2.785175e-12	1.210945e-13
24	7979732	7958000	NM_020244	CHPT1	0.695388	1.854743e-16	3.213713e-12	1.339047e-13
25	7979732	7931226	NM_017580	ZRANB1	0.695307	1.875868e-16	3.250317e-12	1.300127e-13
26	7979732	8144953	NM_001100161	XPO7	0.693766	2.325990e-16	4.030242e-12	1.550093e-13
27	7979732	8076272	NM_003932	ST13	0.692262	2.865554e-16	4.965145e-12	1.838943e-13
28	7979732	8131303	NM_015610	WIPI2	0.692109	2.926750e-16	5.071179e-12	1.811135e-13
29	7979732	8115181	NM_001135643	DCTN4	0.690461	3.673123e-16	6.364420e-12	2.194628e-13
30	7979732	8016324	NM_001114091	CDC27	0.688985	4.495424e-16	7.789221e-12	2.596407e-13
31	7979732	8015715	NM_003766	BECN1	0.687834	5.258171e-16	9.110832e-12	2.938978e-13
32	7979732	7945786	NM_005969	NAP1L4	0.684787	7.934457e-16	1.374803e-11	4.296260e-13
33	7979732	7959023	NM_001085481	MAP1LC3B2	0.684453	8.298390e-16	1.437862e-11	4.357158e-13
34	7979732	7929132	NM_032373	PCGF5	0.682853	1.027610e-15	1.780539e-11	5.236881e-13
35	7979732	7973067	NM_000270	PNP	0.681440	1.239712e-15	2.148049e-11	6.137283e-13
36	7979732	7968199	NM_001260	CDK8	0.681077	1.300713e-15	2.253745e-11	6.260403e-13
37	7979732	8156750	NM_006401	ANP32B	0.680908	1.330176e-15	2.304795e-11	6.229176e-13
38	7979732	8091432	NM_016094	COMMD2	0.680504	1.403061e-15	2.431084e-11	6.397589e-13
39	7979732	7907104	NM_018442	DCAF6	0.679511	1.598985e-15	2.770562e-11	7.104005e-13
40	7979732	8023450	NR_024546	TXNL1	0.679047	1.699594e-15	2.944886e-11	7.362215e-13
41	7979732	8108620	NM_144723	ZMAT2	0.678024	1.943103e-15	3.366814e-11	8.211741e-13
42	7979732	8078962	NM_005875	EIF1B	0.676256	2.446291e-15	4.238688e-11	1.009212e-12
43	7979732	8064007	NM_017896	C20orf11	0.674557	3.047452e-15	5.280320e-11	1.227981e-12
44	7979732	8144669	NM_004462	FDFT1	0.672618	3.909090e-15	6.773280e-11	1.539382e-12
45	7979732	7974229	NM_014315	KLHDC2	0.672053	4.201949e-15	7.280716e-11	1.617937e-12
46	7979732	7968254	NM_152705	POLR1D	0.671561	4.474041e-15	7.752170e-11	1.685254e-12
47	7979732	7982878	NM_007236	CHP	0.670538	5.095613e-15	8.829168e-11	1.878546e-12
48	7979732	8168557	NM_003022	SH3BGRL	0.670337	5.227503e-15	9.057694e-11	1.887020e-12
49	7979732	8123929	NM_207582	ERVFRDE1	-0.669873	5.543652e-15	9.605486e-11	1.960303e-12
50	7979732	8058221	NM_015049	TRAK2	0.669802	5.593718e-15	9.692236e-11	1.938447e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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