[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7200	7915084	NM_024640	YRDC		yrdC domain containing (E. coli)

Fetching correlation data, please wait...
Getting list of correlations for id 7200.
Getting list of p-values for id 7200.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.117 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7915084	8172453	NM_005834	TIMM17B	0.509501	2.844473e-8	4.928619e-4	4.928619e-4
2	7915084	8021919	NM_020040	TUBB4Q	0.505010	3.933647e-8	6.815831e-4	3.407915e-4
3	7915084	8003627	NM_013337	TIMM22	0.502311	4.769252e-8	8.263683e-4	2.754561e-4
4	7915084	8108013	ENST00000365547		0.498938	6.053375e-8	1.048868e-3	2.622171e-4
5	7915084	7932510	ENST00000364520		0.478832	2.379584e-7	4.123105e-3	8.246209e-4
6	7915084	8055208	NM_032357	CCDC115	0.477087	2.668960e-7	4.624507e-3	7.707511e-4
7	7915084	8036840	NM_001626	AKT2	0.475615	2.938664e-7	5.091822e-3	7.274032e-4
8	7915084	7910676			0.474150	3.232676e-7	5.601258e-3	7.001573e-4
9	7915084	8154527			0.472780	3.533015e-7	6.121655e-3	6.801839e-4
10	7915084	8030366	NR_000018	SNORD35A	0.467852	4.847021e-7	8.398434e-3	8.398434e-4
11	7915084	8116595	NM_020135	WRNIP1	0.466944	5.135023e-7	8.897455e-3	8.088595e-4
12	7915084	8065330	ENST00000411196		0.465835	5.509018e-7	9.545476e-3	7.954564e-4
13	7915084	7998604	NM_005326	HAGH	0.463000	6.585704e-7	1.141105e-2	8.777731e-4
14	7915084	8023914	NM_025078	PQLC1	0.461338	7.307207e-7	1.266120e-2	9.043712e-4
15	7915084	8074498	NM_006440	TXNRD2	0.460718	7.594758e-7	1.315944e-2	8.772958e-4
16	7915084	7898856			0.460338	7.776326e-7	1.347404e-2	8.421275e-4
17	7915084	8112335	ENST00000364176		-0.456754	9.705085e-7	1.681600e-2	9.891765e-4
18	7915084	7942812	ENST00000363276		0.452820	1.234139e-6	2.138393e-2	1.187996e-3
19	7915084	8034286	NM_016581	ECSIT	0.451961	1.300124e-6	2.252725e-2	1.185645e-3
20	7915084	7941164	NM_004927	MRPL49	0.447842	1.665632e-6	2.886040e-2	1.443020e-3
21	7915084	8031097	NM_004542	NDUFA3	0.447818	1.667949e-6	2.890055e-2	1.376216e-3
22	7915084	8120981			0.445167	1.952929e-6	3.383840e-2	1.538109e-3
23	7915084	8018511	NM_032478	MRPL38	0.445111	1.959414e-6	3.395077e-2	1.476120e-3
24	7915084	8074842	NM_001130111	FAM108A1	0.442524	2.282516e-6	3.954916e-2	1.647882e-3
25	7915084	8150356	NR_003129	RNF5P1	0.441856	2.373801e-6	4.113085e-2	1.645234e-3
26	7915084	8047286	ENST00000364779		0.441790	2.383007e-6	4.129037e-2	1.588091e-3
27	7915084	8025296	NM_174894	TRAPPC5	0.440201	2.615043e-6	4.531086e-2	1.678180e-3
28	7915084	7994541	NM_014387	LAT	0.440154	2.622110e-6	4.543330e-2	1.622618e-3
29	7915084	8114843	ENST00000364553		0.439811	2.675122e-6	4.635185e-2	1.598340e-3
30	7915084	8018694	NM_002766	PRPSAP1	0.437740	3.016907e-6	5.227395e-2	1.742465e-3
31	7915084	7992388	NM_012225	NUBP2	0.437577	3.045408e-6	5.276778e-2	1.702187e-3
32	7915084	8076461	ENST00000365188		0.437192	3.114001e-6	5.395629e-2	1.686134e-3
33	7915084	8026361	ENST00000410914		0.435953	3.344488e-6	5.794995e-2	1.756059e-3
34	7915084	7945130	ENST00000411383		0.435088	3.515039e-6	6.090508e-2	1.791326e-3
35	7915084	7906185	NM_144772	APOA1BP	0.433440	3.862699e-6	6.692898e-2	1.912257e-3
36	7915084	8156116	NM_001001551	C9orf103	0.430908	4.460648e-6	7.728965e-2	2.146935e-3
37	7915084	7905831	NM_025207	FLAD1	0.430269	4.624832e-6	8.013447e-2	2.165796e-3
38	7915084	8087634	NM_007275	TUSC2	0.430238	4.633076e-6	8.027730e-2	2.112561e-3
39	7915084	8117955	NM_014046	MRPS18B	0.430221	4.637435e-6	8.035283e-2	2.060329e-3
40	7915084	8177824	NM_014046	MRPS18B	0.430221	4.637435e-6	8.035283e-2	2.008821e-3
41	7915084	8179139	NM_014046	MRPS18B	0.430221	4.637435e-6	8.035283e-2	1.959825e-3
42	7915084	8054939	ENST00000411186		0.429501	4.829755e-6	8.368517e-2	1.992504e-3
43	7915084	8026292	ENST00000430596		0.428010	5.252393e-6	9.100822e-2	2.116470e-3
44	7915084	7913665	ENST00000410831		0.426866	5.599878e-6	9.702909e-2	2.205207e-3
45	7915084	8001924	NR_024525	FAM96B	0.425821	5.936227e-6	1.028570e-1	2.285711e-3
46	7915084	8117368	NM_003542	HIST1H4C	0.425684	5.981404e-6	1.036398e-1	2.253039e-3
47	7915084	7967987	NM_024026	MRP63	0.425409	6.073751e-6	1.052399e-1	2.239147e-3
48	7915084	8032863	NM_019107	C19orf10	0.424240	6.481239e-6	1.123004e-1	2.339592e-3
49	7915084	8093943	AK026375	LOC93622	0.423972	6.578109e-6	1.139789e-1	2.326100e-3
50	7915084	8087669	NM_006545	NPRL2	0.423921	6.596818e-6	1.143031e-1	2.286061e-3

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation