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Correlations in the bone dataset

Use the form to search for:

an EntrezGene ID (e.g. "1234")
an Accession Number (e.g. "BE644809" or "NM_005715")
a Gene Symbol (e.g. "HMGCR" or "ZNF532", not case-sensitive)
a variable label (e.g. "1562529_s_at" or "hsa-miR-29c*")
a variable number (e.g. "#1234" for the 1234^th variable in the dataset)

(View the full list of available key terms [here]).

Starting timer.
Connected to database.
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
9796	213932_x_at	AI923492	HLA-A		major histocompatibility complex, class I, A
10389	215313_x_at	AA573862	HLA-A		major histocompatibility complex, class I, A

Fetching correlation data, please wait...
Getting list of correlations for id 9796.
Getting list of p-values for id 9796.
1 of 2 done.
Getting list of correlations for id 10389.
Getting list of p-values for id 10389.
2 of 2 done.
Calculating corrections for multiple testing (n=46234), please wait...
Done; whole program took 0.170 seconds. Transmitting 50 results:

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	215313_x_at	213932_x_at	AI923492	HLA-A	0.865909	2.160073e-26	9.986882e-22	9.986882e-22
2	213932_x_at	215313_x_at	AA573862	HLA-A	0.865909	2.160073e-26	9.986882e-22	4.993441e-22
3	215313_x_at	221875_x_at	AW514210	HLA-F	0.676300	1.666843e-12	7.706484e-8	2.568828e-8
4	215313_x_at	217436_x_at	M80469	HLA-J	0.675681	1.777135e-12	8.216405e-8	2.054101e-8
5	215313_x_at	211529_x_at	M90684	HLA-G	0.674200	2.070243e-12	9.571564e-8	1.914313e-8
6	215313_x_at	208729_x_at	D83043	HLA-B	0.656968	1.148678e-11	5.310799e-7	8.851332e-8
7	215313_x_at	211528_x_at	M90685	HLA-G	0.654960	1.392477e-11	6.437979e-7	9.197113e-8
8	213932_x_at	211529_x_at	M90684	HLA-G	0.643500	4.065611e-11	1.879695e-6	2.349618e-7
9	215313_x_at	204806_x_at	NM_018950	HLA-F	0.640807	5.195817e-11	2.402234e-6	2.669149e-7
10	215313_x_at	209140_x_at	L42024	HLA-B	0.606365	9.793334e-10	4.527850e-5	4.527850e-6
11	213932_x_at	217436_x_at	M80469	HLA-J	0.585729	4.837963e-9	2.236784e-4	2.033440e-5
12	213932_x_at	1558770_a_at	AK091819	PIK3R6	0.585062	5.084904e-9	2.350955e-4	1.959129e-5
13	213932_x_at	211528_x_at	M90685	HLA-G	0.584662	5.238747e-9	2.422082e-4	1.863140e-5
14	213932_x_at	212576_at	AB011116	MGRN1	0.576824	9.317943e-9	4.308058e-4	3.077184e-5
15	213932_x_at	221875_x_at	AW514210	HLA-F	0.574627	1.092081e-8	5.049126e-4	3.366084e-5
16	215313_x_at	210514_x_at	AF226990	HLA-G	0.572297	1.290610e-8	5.967007e-4	3.729379e-5
17	213932_x_at	208729_x_at	D83043	HLA-B	0.569274	1.599893e-8	7.396945e-4	4.351144e-5
18	215313_x_at	201050_at	NM_012268	PLD3	0.561444	2.763276e-8	1.277573e-3	7.097627e-5
19	215313_x_at	1558770_a_at	AK091819	PIK3R6	0.552616	5.031855e-8	2.326428e-3	1.224436e-4
20	215313_x_at	205423_at	NM_001127	AP1B1	0.551719	5.342801e-8	2.470191e-3	1.235095e-4
21	215313_x_at	203402_at	AL520102	KCNAB2	0.547806	6.925474e-8	3.201923e-3	1.524725e-4
22	215313_x_at	38069_at	Z67743	CLCN7	0.544009	8.879543e-8	4.105368e-3	1.866076e-4
23	213932_x_at	209381_x_at	BC004434	SF3A2	0.543096	9.422535e-8	4.356415e-3	1.894093e-4
24	213932_x_at	38069_at	Z67743	CLCN7	0.541650	1.034705e-7	4.783856e-3	1.993273e-4
25	213932_x_at	229164_s_at	AI337369	ABTB1	0.540916	1.084827e-7	5.015587e-3	2.006235e-4
26	213932_x_at	1553993_s_at	BC024312	MED25	0.540743	1.096973e-7	5.071747e-3	1.950672e-4
27	213932_x_at	226146_at	BE503186		0.539037	1.223952e-7	5.658818e-3	2.095859e-4
28	215313_x_at	209304_x_at	AF087853	GADD45B	0.536564	1.433086e-7	6.625732e-3	2.366333e-4
29	213932_x_at	209333_at	AB018265	ULK1	0.536224	1.464340e-7	6.770232e-3	2.334563e-4
30	215313_x_at	218143_s_at	NM_005697	SCAMP2	0.535794	1.504793e-7	6.957260e-3	2.319087e-4
31	215313_x_at	202958_at	NM_002833	PTPN9	0.535338	1.548875e-7	7.161068e-3	2.310022e-4
32	213932_x_at	203442_x_at	AA478965	EML3	0.534788	1.603717e-7	7.414626e-3	2.317071e-4
33	213932_x_at	225530_at	BE396735	MOBKL2A	0.531646	1.953734e-7	9.032894e-3	2.737241e-4
34	215313_x_at	224756_s_at	AL578487	BAT5	0.528791	2.333479e-7	1.078861e-2	3.173120e-4
35	213932_x_at	209044_x_at	BC004273	SF3B4	0.528320	2.402459e-7	1.110753e-2	3.173580e-4
36	213932_x_at	213038_at	AL031602	RNF19B	0.527885	2.467959e-7	1.141036e-2	3.169545e-4
37	215313_x_at	203900_at	NM_024547	KIAA0467	0.527606	2.510943e-7	1.160910e-2	3.137593e-4
38	213932_x_at	212969_x_at	BE222618	EML3	0.527302	2.558387e-7	1.182845e-2	3.112750e-4
39	213932_x_at	227527_at	AI394529	MLL2	0.525983	2.774702e-7	1.282856e-2	3.289374e-4
40	213932_x_at	209140_x_at	L42024	HLA-B	0.525310	2.891471e-7	1.336843e-2	3.342106e-4
41	215313_x_at	200660_at	NM_005620	S100A11	0.525265	2.899454e-7	1.340534e-2	3.269594e-4
42	215313_x_at	217891_at	NM_022744	C16orf58	0.523676	3.194997e-7	1.477175e-2	3.517083e-4
43	215313_x_at	212576_at	AB011116	MGRN1	0.523430	3.243348e-7	1.499530e-2	3.487278e-4
44	213932_x_at	203402_at	AL520102	KCNAB2	0.522590	3.413317e-7	1.578113e-2	3.586620e-4
45	215313_x_at	211799_x_at	U62824	HLA-C	0.521413	3.665598e-7	1.694753e-2	3.766117e-4
46	215313_x_at	202621_at	NM_001571	IRF3	0.521332	3.683722e-7	1.703132e-2	3.702461e-4
47	215313_x_at	226146_at	BE503186		0.521030	3.751485e-7	1.734462e-2	3.690344e-4
48	215313_x_at	216526_x_at	AK024836	HLA-C	0.520689	3.829538e-7	1.770549e-2	3.688643e-4
49	215313_x_at	220954_s_at	NM_013440	PILRB	0.520640	3.840831e-7	1.775770e-2	3.624020e-4
50	213932_x_at	213521_at	AW575379	PTPN18	0.520298	3.920978e-7	1.812825e-2	3.625650e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser 2.0: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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