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Correlations in the bone dataset

Use the form to search for:

an EntrezGene ID (e.g. "1234")
an Accession Number (e.g. "BE644809" or "NM_005715")
a Gene Symbol (e.g. "HMGCR" or "ZNF532", not case-sensitive)
a variable label (e.g. "1562529_s_at" or "hsa-miR-29c*")
a variable number (e.g. "#1234" for the 1234^th variable in the dataset)

(View the full list of available key terms [here]).

Starting timer.
Connected to database.
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 5 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
4929	204466_s_at	BG260394	SNCA		synuclein, alpha (non A4 component of amyloid precursor)
4930	204467_s_at	NM_000345	SNCA		synuclein, alpha (non A4 component of amyloid precursor)
6262	207827_x_at	L36675	SNCA		synuclein, alpha (non A4 component of amyloid precursor)
8113	211546_x_at	L36674	SNCA		synuclein, alpha (non A4 component of amyloid precursor)
20138	236081_at	AI929792	SNCA		synuclein, alpha (non A4 component of amyloid precursor)

Fetching correlation data, please wait...
Getting list of correlations for id 4929.
Getting list of p-values for id 4929.
1 of 5 done.
Getting list of correlations for id 4930.
Getting list of p-values for id 4930.
2 of 5 done.
Getting list of correlations for id 6262.
Getting list of p-values for id 6262.
3 of 5 done.
Getting list of correlations for id 8113.
Getting list of p-values for id 8113.
4 of 5 done.
Getting list of correlations for id 20138.
Getting list of p-values for id 20138.
5 of 5 done.
Calculating corrections for multiple testing (n=115585), please wait...
Done; whole program took 0.431 seconds. Transmitting 50 results:

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	207827_x_at	211546_x_at	L36674	SNCA	0.981910	4.866369e-61	5.624792e-56	5.624792e-56
2	211546_x_at	207827_x_at	L36675	SNCA	0.981910	4.866369e-61	5.624792e-56	2.812396e-56
3	204467_s_at	236081_at	AI929792	SNCA	0.832653	9.453122e-23	1.092639e-17	3.642130e-18
4	236081_at	204467_s_at	NM_000345	SNCA	0.832653	9.453122e-23	1.092639e-17	2.731598e-18
5	204466_s_at	211546_x_at	L36674	SNCA	0.830747	1.444473e-22	1.669594e-17	3.339188e-18
6	211546_x_at	204466_s_at	BG260394	SNCA	0.830747	1.444473e-22	1.669594e-17	2.782657e-18
7	204466_s_at	207827_x_at	L36675	SNCA	0.798247	9.662483e-20	1.116838e-14	1.595483e-15
8	207827_x_at	204466_s_at	BG260394	SNCA	0.798247	9.662483e-20	1.116838e-14	1.396048e-15
9	207827_x_at	217799_x_at	NM_003344	UBE2H	0.771810	8.473196e-18	9.793743e-13	1.088194e-13
10	207827_x_at	223123_s_at	AI867781	C1orf128	0.761758	3.979207e-17	4.599366e-12	4.599366e-13
11	204466_s_at	1554423_a_at	AF233225	FBXO7	0.748240	2.836570e-16	3.278650e-11	2.980591e-12
12	207827_x_at	208459_s_at	NM_015024	XPO7	0.745330	4.259495e-16	4.923337e-11	4.102781e-12
13	204466_s_at	212166_at	H38643	XPO7	0.741575	7.140610e-16	8.253474e-11	6.348826e-12
14	204467_s_at	227498_at	AI480314	SOX6	0.739453	9.525148e-16	1.100964e-10	7.864030e-12
15	211546_x_at	223123_s_at	AI867781	C1orf128	0.739403	9.588902e-16	1.108333e-10	7.388888e-12
16	207827_x_at	212166_at	H38643	XPO7	0.739197	9.860107e-16	1.139680e-10	7.123003e-12
17	211546_x_at	217799_x_at	NM_003344	UBE2H	0.737696	1.206581e-15	1.394627e-10	8.203687e-12
18	211546_x_at	1554423_a_at	AF233225	FBXO7	0.735759	1.562303e-15	1.805788e-10	1.003216e-11
19	211546_x_at	212166_at	H38643	XPO7	0.734031	1.963695e-15	2.269737e-10	1.194599e-11
20	207827_x_at	209052_s_at	BF111870	WHSC1	0.733017	2.243880e-15	2.593588e-10	1.296794e-11
21	207827_x_at	209026_x_at	AF141349	TUBB	0.732850	2.293632e-15	2.651095e-10	1.262426e-11
22	204466_s_at	229498_at	AI197932		0.729793	3.415030e-15	3.947263e-10	1.794210e-11
23	211546_x_at	202459_s_at	U55968	LPIN2	0.726132	5.462530e-15	6.313865e-10	2.745159e-11
24	207827_x_at	221962_s_at	AI829920	UBE2H	0.723170	7.944683e-15	9.182862e-10	3.826192e-11
25	211546_x_at	208459_s_at	NM_015024	XPO7	0.722315	8.843610e-15	1.022189e-9	4.088755e-11
26	211546_x_at	204147_s_at	NM_007111	TFDP1	0.721914	9.298466e-15	1.074763e-9	4.133705e-11
27	204467_s_at	203764_at	NM_014750	DLGAP5	0.721654	9.604822e-15	1.110173e-9	4.111753e-11
28	204466_s_at	206937_at	NM_003126	SPTA1	0.721495	9.798227e-15	1.132528e-9	4.044743e-11
29	207827_x_at	1554423_a_at	AF233225	FBXO7	0.721307	1.002949e-14	1.159259e-9	3.997444e-11
30	207827_x_at	202459_s_at	U55968	LPIN2	0.719685	1.226755e-14	1.417945e-9	4.726484e-11
31	204466_s_at	217748_at	NM_015999	ADIPOR1	0.719436	1.265272e-14	1.462465e-9	4.717628e-11
32	236081_at	212829_at	BE878277	PIP4K2A	0.718680	1.388865e-14	1.605320e-9	5.016624e-11
33	207827_x_at	204147_s_at	NM_007111	TFDP1	0.718178	1.477445e-14	1.707704e-9	5.174862e-11
34	204466_s_at	216606_x_at	AL050332	LYPLA2P1	0.717431	1.619343e-14	1.871717e-9	5.505051e-11
35	204466_s_at	202974_at	NM_002436	MPP1	0.716570	1.799120e-14	2.079513e-9	5.941467e-11
36	207827_x_at	221237_s_at	NM_030758	OSBP2	0.715335	2.091181e-14	2.417091e-9	6.714142e-11
37	207827_x_at	207542_s_at	NM_000385		0.715120	2.146623e-14	2.481174e-9	6.705876e-11
38	207827_x_at	211714_x_at	BC005838	TUBB	0.713838	2.506686e-14	2.897354e-9	7.624615e-11
39	204467_s_at	223266_at	AB038950	STRADB	0.711940	3.149263e-14	3.640076e-9	9.333527e-11
40	207827_x_at	211922_s_at	AY028632	CAT	0.709845	4.042285e-14	4.672275e-9	1.168069e-10
41	211546_x_at	208971_at	M14016	UROD	0.709535	4.193972e-14	4.847603e-9	1.182342e-10
42	236081_at	201285_at	NM_013446	MKRN1	0.708394	4.799613e-14	5.547633e-9	1.320865e-10
43	211546_x_at	222678_s_at	BF057821	DCUN1D1	0.707892	5.092341e-14	5.885982e-9	1.368833e-10
44	204467_s_at	229498_at	AI197932		0.706495	5.999063e-14	6.934017e-9	1.575913e-10
45	236081_at	227497_at	BE326808	SOX6	0.706469	6.017421e-14	6.955236e-9	1.545608e-10
46	207827_x_at	210579_s_at	AF220122	TRIM10	0.705883	6.444204e-14	7.448534e-9	1.619246e-10
47	236081_at	239492_at	R12499	SEC14L4	0.705737	6.554602e-14	7.576137e-9	1.611944e-10
48	207827_x_at	217202_s_at	U08626	GLUL	0.704657	7.432754e-14	8.591149e-9	1.789823e-10
49	204466_s_at	216241_s_at	X57198	TCEA1	0.702848	9.163040e-14	1.059110e-8	2.161449e-10
50	211546_x_at	209052_s_at	BF111870	WHSC1	0.702139	9.941625e-14	1.149103e-8	2.298206e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser 2.0: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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