[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 11201.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
11201	8016261	NM_005456	MAPK8IP1		mitogen-activated protein kinase 8 interacting protein 1

Fetching correlation data, please wait...
Getting list of correlations for id 11201.
Getting list of p-values for id 11201.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.101 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8016261	8007848	NM_005456	MAPK8IP1	0.987683	8.423285e-85	1.459503e-80	1.459503e-80
2	8016261	8016245	NR_002940	LRRC37A4	-0.639518	2.090295e-13	3.621854e-9	1.810927e-9
3	8016261	8007919	NR_002940	LRRC37A4	-0.631151	5.302020e-13	9.186810e-9	3.062270e-9
4	8016261	7899071	ENST00000384508		0.591316	3.105850e-11	5.381507e-7	1.345377e-7
5	8016261	8110708	NM_007030	TPPP	0.580709	8.378397e-11	1.451725e-6	2.903450e-7
6	8016261	7900001	NM_178548	TFAP2E	0.578647	1.011885e-10	1.753293e-6	2.922154e-7
7	8016261	7994609	NM_014298	QPRT	0.578479	1.027524e-10	1.780391e-6	2.543416e-7
8	8016261	7918188	NM_013386	SLC25A24	-0.573869	1.559352e-10	2.701890e-6	3.377362e-7
9	8016261	8086150	NM_006309	LRRFIP2	-0.570938	2.026151e-10	3.510712e-6	3.900791e-7
10	8016261	8075126	NM_002430	MN1	0.564227	3.655305e-10	6.333548e-6	6.333548e-7
11	8016261	8048460	NM_003936	CDK5R2	0.559666	5.417381e-10	9.386697e-6	8.533360e-7
12	8016261	7911403	NM_004195	TNFRSF18	0.559331	5.575166e-10	9.660090e-6	8.050075e-7
13	8016261	8053728	NM_000798	DRD5	0.557969	6.262412e-10	1.085088e-5	8.346832e-7
14	8016261	8011188	ENST00000330676		0.557849	6.326632e-10	1.096215e-5	7.830111e-7
15	8016261	8074212	NM_001037814	GAB4	0.555881	7.476147e-10	1.295392e-5	8.635946e-7
16	8016261	8049538	NM_001137550	LRRFIP1	0.553952	8.795956e-10	1.524075e-5	9.525471e-7
17	8016261	8087596	NM_003549	HYAL3	0.553898	8.835883e-10	1.530993e-5	9.005844e-7
18	8016261	8028872	NM_001042544	LTBP4	0.552589	9.860611e-10	1.708548e-5	9.491934e-7
19	8016261	8072941	NM_003614	GALR3	0.551930	1.041909e-9	1.805316e-5	9.501666e-7
20	8016261	8163599	NM_015404	DFNB31	0.551559	1.074622e-9	1.861997e-5	9.309984e-7
21	8016261	8165453	NM_001013653	LRRC26	0.551222	1.105211e-9	1.914998e-5	9.119040e-7
22	8016261	8019574	NM_033184	KRTAP2-4	0.551064	1.119863e-9	1.940387e-5	8.819942e-7
23	8016261	8015214	NM_033184	KRTAP2-4	0.551064	1.119863e-9	1.940387e-5	8.436467e-7
24	8016261	8132840	NM_182595	POM121L12	0.550710	1.153330e-9	1.998375e-5	8.326564e-7
25	8016261	7950501	NM_030792	GDPD5	0.550407	1.182739e-9	2.049332e-5	8.197327e-7
26	8016261	8017840	ENST00000443126		-0.550402	1.183226e-9	2.050175e-5	7.885288e-7
27	8016261	8131087	NM_001080461	UNCX	0.549282	1.298322e-9	2.249602e-5	8.331861e-7
28	8016261	8047736			0.549046	1.323963e-9	2.294032e-5	8.192970e-7
29	8016261	8052018	NM_022055	KCNK12	0.548323	1.405333e-9	2.435020e-5	8.396622e-7
30	8016261	8106976	NM_199243	GPR150	0.548115	1.429635e-9	2.477129e-5	8.257096e-7
31	8016261	8044927	NM_002193	INHBB	0.547427	1.513025e-9	2.621619e-5	8.456835e-7
32	8016261	8144317	NM_014867	KBTBD11	0.546967	1.571271e-9	2.722541e-5	8.507940e-7
33	8016261	7931181	NM_001105574	HMX3	0.546416	1.643910e-9	2.848403e-5	8.631524e-7
34	8016261	7918902	NR_026665	CD58	-0.545968	1.705368e-9	2.954891e-5	8.690857e-7
35	8016261	8001750	NM_018231	SLC38A7	0.545566	1.762440e-9	3.053779e-5	8.725083e-7
36	8016261	7973745	NM_005249	FOXG1	0.545512	1.770153e-9	3.067143e-5	8.519843e-7
37	8016261	7991313	NM_002666	PLIN1	0.544898	1.861168e-9	3.224846e-5	8.715800e-7
38	8016261	8029870	NM_002517	NPAS1	0.544122	1.982632e-9	3.435307e-5	9.040282e-7
39	8016261	8009430	NR_027283	LOC440461	0.544042	1.995593e-9	3.457764e-5	8.866062e-7
40	8016261	7977432	NM_025268	TMEM121	0.543765	2.041007e-9	3.536452e-5	8.841131e-7
41	8016261	7997733	NM_005251	FOXC2	0.543145	2.146275e-9	3.718851e-5	9.070369e-7
42	8016261	8079896	NM_004186	SEMA3F	0.542572	2.248385e-9	3.895777e-5	9.275659e-7
43	8016261	8093425	NM_000203	IDUA	0.542146	2.327211e-9	4.032359e-5	9.377579e-7
44	8016261	7937433	NM_000797	DRD4	0.541948	2.364640e-9	4.097212e-5	9.311845e-7
45	8016261	8008201	NM_002507	NGFR	0.540761	2.602036e-9	4.508548e-5	1.001900e-6
46	8016261	8093074	NM_001039617	ZDHHC19	0.540229	2.715711e-9	4.705512e-5	1.022937e-6
47	8016261	8049536	NM_001137550	LRRFIP1	0.539703	2.833010e-9	4.908756e-5	1.044416e-6
48	8016261	8161026	NM_174923	CCDC107	0.538551	3.106462e-9	5.382566e-5	1.121368e-6
49	8016261	8118632	hsa-mir-219-1		0.538484	3.123112e-9	5.411416e-5	1.104371e-6
50	8016261	8062427	NM_080607	VSTM2L	0.538453	3.130969e-9	5.425030e-5	1.085006e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation