[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 12943.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
12943	7986943	ENST00000410928

Fetching correlation data, please wait...
Getting list of correlations for id 12943.
Getting list of p-values for id 12943.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.110 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7986943	7986661	ENST00000410928		1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7986943	7982152	ENST00000410928		1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	7986943	7981909	ENST00000458920		0.970279	2.742075e-65	4.751193e-61	1.583731e-61
4	7986943	7981771	ENST00000410537		0.865718	9.934370e-33	1.721328e-28	4.303321e-29
5	7986943	7981893	ENST00000410537		0.865718	9.934370e-33	1.721328e-28	3.442656e-29
6	7986943	7992845	NM_003456	ZNF205	0.802821	7.153333e-25	1.239458e-20	2.065763e-21
7	7986943	8044933	NM_005270	GLI2	0.792751	7.055560e-24	1.222517e-19	1.746453e-20
8	7986943	7992460	NM_001099456	NPW	0.791466	9.363545e-24	1.622421e-19	2.028027e-20
9	7986943	8090770			0.790979	1.041908e-23	1.805313e-19	2.005904e-20
10	7986943	8012344	NM_032580	HES7	0.789858	1.330647e-23	2.305612e-19	2.305612e-20
11	7986943	8033462	NM_206833	CTXN1	0.785467	3.419683e-23	5.925284e-19	5.386622e-20
12	7986943	7937560	NM_002457	MUC2	0.779220	1.261528e-22	2.185850e-18	1.821541e-19
13	7986943	7991828	ENST00000431654		0.777540	1.779150e-22	3.082733e-18	2.371333e-19
14	7986943	7991661	ENST00000411208		0.776605	2.151720e-22	3.728286e-18	2.663061e-19
15	7986943	8113981	NM_004199	P4HA2	0.775147	2.888642e-22	5.005150e-18	3.336766e-19
16	7986943	8137330	ENST00000356058		0.772144	5.263286e-22	9.119696e-18	5.699810e-19
17	7986943	8079021	NM_001904	CTNNB1	-0.771894	5.530455e-22	9.582619e-18	5.636835e-19
18	7986943	8024605	NM_021938	CELF5	0.771680	5.769340e-22	9.996536e-18	5.553631e-19
19	7986943	7929315	NM_183374	CYP26C1	0.769994	8.040450e-22	1.393169e-17	7.332467e-19
20	7986943	8104253	NM_033120	NKD2	0.769993	8.041985e-22	1.393435e-17	6.967174e-19
21	7986943	8121209	NM_005604	POU3F2	0.768872	1.001257e-21	1.734879e-17	8.261328e-19
22	7986943	8024100	NM_138690	GRIN3B	0.768499	1.076769e-21	1.865717e-17	8.480534e-19
23	7986943	8062492	NM_020336	RALGAPB	-0.767432	1.324457e-21	2.294887e-17	9.977767e-19
24	7986943	8111216	ENST00000426411		0.767241	1.374399e-21	2.381422e-17	9.922590e-19
25	7986943	8138670	NM_031243	HNRNPA2B1	-0.765528	1.911464e-21	3.311994e-17	1.324798e-18
26	7986943	8036270	NM_152658	THAP8	0.764059	2.530570e-21	4.384718e-17	1.686430e-18
27	7986943	8008201	NM_002507	NGFR	0.763355	2.893185e-21	5.013021e-17	1.856675e-18
28	7986943	8031489	NM_033113	ZNF628	0.763349	2.896381e-21	5.018560e-17	1.792343e-18
29	7986943	7977033	NM_030943	AMN	0.763038	3.072131e-21	5.323082e-17	1.835545e-18
30	7986943	7985920	NM_001039958	MESP2	0.762357	3.494008e-21	6.054068e-17	2.018023e-18
31	7986943	8166500	NM_003410	ZFX	-0.762302	3.530632e-21	6.117526e-17	1.973395e-18
32	7986943	8028407	NM_000540	RYR1	0.761962	3.764680e-21	6.523061e-17	2.038457e-18
33	7986943	8100902	NM_032217	ANKRD17	-0.761020	4.493867e-21	7.786523e-17	2.359552e-18
34	7986943	7930956	NM_007190	SEC23IP	-0.760917	4.581209e-21	7.937861e-17	2.334665e-18
35	7986943	7989887	NM_032445	MEGF11	0.760844	4.644764e-21	8.047983e-17	2.299424e-18
36	7986943	7992147	NM_021098	CACNA1H	0.760823	4.662951e-21	8.079495e-17	2.244304e-18
37	7986943	8003948	NM_001014985	GLTPD2	0.759771	5.675692e-21	9.834271e-17	2.657911e-18
38	7986943	8088485	NM_018008	FEZF2	0.759582	5.878593e-21	1.018584e-16	2.680484e-18
39	7986943	8141648	NM_015831	ACHE	0.759319	6.174401e-21	1.069838e-16	2.743175e-18
40	7986943	8091048	NR_023350	COPB2	-0.758989	6.564484e-21	1.137428e-16	2.843570e-18
41	7986943	7977693	NM_020920	CHD8	-0.758687	6.941986e-21	1.202838e-16	2.933751e-18
42	7986943	8114550	NM_004883	NRG2	0.758579	7.082390e-21	1.227166e-16	2.921823e-18
43	7986943	7913300	NM_016287	HP1BP3	-0.758258	7.516496e-21	1.302383e-16	3.028798e-18
44	7986943	8060660	NM_052970	HSPA12B	0.757888	8.048337e-21	1.394535e-16	3.169398e-18
45	7986943	7997264	NM_001906	CTRB1	0.757709	8.319646e-21	1.441545e-16	3.203433e-18
46	7986943	8153838	NM_004260	RECQL4	0.757274	9.014444e-21	1.561933e-16	3.395506e-18
47	7986943	8104447	ENST00000410122		0.757106	9.297807e-21	1.611031e-16	3.427726e-18
48	7986943	7935528	NM_003015	SFRP5	0.756984	9.507692e-21	1.647398e-16	3.432079e-18
49	7986943	7927099	NR_026827	LOC84856	0.756727	9.968543e-21	1.727249e-16	3.524999e-18
50	7986943	8098732	NM_033178	DUX4	0.756503	1.038714e-20	1.799779e-16	3.599559e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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